Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGAACCATTGCCGAGTGGGAATCTGCCCCCTGGGTTTGATGCAACTTCTTGTCGTAGTGTgtaagttcattgctgctttttcttatttcagtagtcctaccccagtcagttttttttgttttctttctgtattttgtaatttttttaagctctcattgtt...

Basic information

species Physcomitrella patens
transcript PP1S84_50V6.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S84_50V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: EFJ13606 (Selaginella moellendorffii), 5'ss of exon 2
ATGGAACCATTGCCGAGTGGGAATCTGCCCCCTGGGTTTGATGCAACTTCTTGTCGTAGTGTgtaagttcattgctgctttttcttatttcagtagtcctaccccagt-cagttttttttgttttctttctgtattttgtaatttttttaagctctcattgtt-------------------------------------------------------------------------------------------
|| || ||| | || ||||| |||||||| || ||||||||||||||||||||||| ||||||| ||| | || ||  |||||||| ||||  |  |  |   ||| | ||| | | | | || | |||     ||   |  | |||||    | |  |||||                                                                                           
ATTGAGCCAATTCCAAGTGGAAATCTGCCACCAGGGTTTGATGCAACTTCTTGTCGCAGTGTgtgagtgcttttct-ttttttcttttttcttttttgttgtaccaattcaggtatctgttttcttttttcaatttcctttttcttttttccttttggttgtttattaacttaaaaactatgctgagcttgggccgtcattgctttggttgcggaatgattttgtttctagtctgatgttcattcctgctgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162254430|gb|FC430656.1|FC430656
EST:     CCGAGTGGGAATCTGCCCCCTGGGTTTGATGCAACTTCTTGTCGTAGTGT                         TTACGTAGGCAACATACACACGAAAGTTACAGAGGCGCTTCTTGCCGAAGT
genomic: CCGAGTGGGAATCTGCCCCCTGGGTTTGATGCAACTTCTTGTCGTAGTGTgtaagttcat ... ctttatgcagTTACGTAGGCAACATACACACGAAAGTTACAGAGGCGCTTCTTGCCGAAGT
EST: gi|100358593|gb|BY965724.1|BY965724
EST:     CCGAGTGGGAATCTGCCCCCTGGGTTTGATGCAACTTCTTGTCGTAGTGT                         TTACGTAGGCAACATACACACGAAAGTTACAGAGGCGCTTCTTGCCGAAGT
genomic: CCGAGTGGGAATCTGCCCCCTGGGTTTGATGCAACTTCTTGTCGTAGTGTgtaagttcat ... ctttatgcagTTACGTAGGCAACATACACACGAAAGTTACAGAGGCGCTTCTTGCCGAAGT
EST: gi|18363170|gb|BJ195242.1|BJ195242
EST:     CCGAGTGGGAATCTGCCCCCTGGGTTTGATGCAACTTCTTGTCGTAGTGT                         TTACGTAGGCAACATACACACGAAAGTTACAGAGGCGCTTCTTGCCGAAGT
genomic: CCGAGTGGGAATCTGCCCCCTGGGTTTGATGCAACTTCTTGTCGTAGTGTgtaagttcat ... ctttatgcagTTACGTAGGCAACATACACACGAAAGTTACAGAGGCGCTTCTTGCCGAAGT
EST: gi|100407206|gb|BY974055.1|BY974055
EST:     CCGAGTGGGAATCTGCCCCCTGGGTTTGATGCAACTTCTTGTCGTAGTGT                         TTACGTAGGCTACATACACACGAAAGTTACAGAGGCGCTTCTTGCCGAAGT
genomic: CCGAGTGGGAATCTGCCCCCTGGGTTTGATGCAACTTCTTGTCGTAGTGTgtaagttcat ... ctttatgcagTTACGTAGGCAACATACACACGAAAGTTACAGAGGCGCTTCTTGCCGAAGT
EST: gi|18373540|gb|BJ205118.1|BJ205118
EST:     CCGAGTGGGAATCTGCCCCCTGGGTTTGATGCAACTTCTTGTCGTAGTGT                         TTACGTAGGCAACATACACACGAAAGTTACAGAGGCGCTTCTTGCCGAAGT
genomic: CCGAGTGGGAATCTGCCCCCTGGGTTTGATGCAACTTCTTGTCGTAGTGTgtaagttcat ... ctttatgcagTTACGTAGGCAACATACACACGAAAGTTACAGAGGCGCTTCTTGCCGAAGT
EST: gi|162152881|gb|FC328975.1|FC328975
EST:     CCGAGTGGGAATCTGCCCCCTGGGTTTGATGCAACTTCTTGTCGTAGTGT                         TTACGTAGGCAACATACACACGAAAGTTACAGAGGCGCTTCTTGCCGAAGT
genomic: CCGAGTGGGAATCTGCCCCCTGGGTTTGATGCAACTTCTTGTCGTAGTGTgtaagttcat ... ctttatgcagTTACGTAGGCAACATACACACGAAAGTTACAGAGGCGCTTCTTGCCGAAGT
EST: gi|18375107|gb|BJ206685.1|BJ206685
EST:     CCGAGTGGGAATCTGCCCCCTGGGTTTGATGCAACTTCTTGTCGTAGTGT                         TTACGTAGGCAACATACACACGAAAGTTACAGAGGCGCTTCTTGCCCGAAG
genomic: CCGAGTGGGAATCTGCCCCCTGGGTTTGATGCAACTTCTTGTCGTAGTGTgtaagttcat ... ctttatgcagTTACGTAGGCAACATACACACGAAAGTTACAGAGGCGCTTCTTGCC-GAAG
EST: gi|100377715|gb|BY986366.1|BY986366
EST:     CCGAGTGGGAATCTGCCCCCTGGGTTTGATGCAACTTCTTGTCGTAGTGT                         TTACGTAGGCTACATACACACGAAAGTTACAGAGGCGCTTCTTGCCGAAGT
genomic: CCGAGTGGGAATCTGCCCCCTGGGTTTGATGCAACTTCTTGTCGTAGTGTgtaagttcat ... ctttatgcagTTACGTAGGCAACATACACACGAAAGTTACAGAGGCGCTTCTTGCCGAAGT