1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TCGGGGGTTGGCATATCTTCATGAAGATTGTCATCCTCGCATTATCCATCGTGACATCAAGTCTTCGAACATACTTTTGGATGACAAATATGAAGCTCAGgtaagggatttccacgagctcctctgattggtgattattatttgacacttttatttgtgttcttatgtgaagcctctatattggtgtgcgtacttgagacttgtttttattaataagtaagtaaaaggataaaagtatcttccatgctctgaaagcgtctgtcttgtgcag
species | Physcomitrella patens |
transcript | PP1S83_193V6.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GTGACATCAAGTCTTCGAACATACTTTTGGATGACAAATATGAAGCTCAG GTTGCTGATTTTGGGTTGGCTAGGCCAGCGTCTGACACAAATACTCATGTTEST: gi|162242635|gb|FC419251.1|FC419251
genomic: GTGACATCAAGTCTTCGAACATACTTTTGGATGACAAATATGAAGCTCAGgtaagggatt ... tcttgtgcagGTTGCTGATTTTGGGTTGGCTAGGCCAGCGTCTGACACAAATACTCATGTT
EST: GTGACATCAAGTCTTCGAACATACTTTTGGATGACAAATATGAAGCTCAG GTTGCTGATTTTGGGTTGGCTAGGCCAGCGTCTGACACAAATACTCATGTTEST: gi|162164921|gb|FC340565.1|FC340565
genomic: GTGACATCAAGTCTTCGAACATACTTTTGGATGACAAATATGAAGCTCAGgtaagggatt ... tcttgtgcagGTTGCTGATTTTGGGTTGGCTAGGCCAGCGTCTGACACAAATACTCATGTT
EST: GTGACATCAAGTCTTCGAACATACTTTTGGATGACAAATATGAAGCTCAG GTTGCTGATTTTGGGTTGGCTAGGCCAGCGTCTGACACAAATACTCATGTTEST: gi|162163940|gb|FC339850.1|FC339850
genomic: GTGACATCAAGTCTTCGAACATACTTTTGGATGACAAATATGAAGCTCAGgtaagggatt ... tcttgtgcagGTTGCTGATTTTGGGTTGGCTAGGCCAGCGTCTGACACAAATACTCATGTT
EST: CTTTTGGATGACAAATATGAAGCTCAG GTTGCTGATTTTGGGTTGGCTAGGCCAGCGTCTGACACAAATACTCATGTT
genomic: CTTTTGGATGACAAATATGAAGCTCAGgtaagggatt ... tcttgtgcagGTTGCTGATTTTGGGTTGGCTAGGCCAGCGTCTGACACAAATACTCATGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCGGGGGTTGGCATATCTTCATGAAGATTGTCATCCTCGCATTATCCATCGTGACATCAAGTCTTCGAACATACTTTTGGATGACAAATATGAAGCTCAGgtaagggatttccacgagctcctctgattggtgattattatttgacacttttatttgtgttcttatgtgaagcctctatattggtgtgcgtacttgagacttgtttttattaataagtaagtaaaaggataaaagtatcttccatgctctgaaagcgtctgtcttgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA