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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAACGAAGATTCTACGCTCGGCACCTGTTGGAGGAGGTTGCATCAGCACTGCCACTCGCTACGATACAGACGCGGGCTCCTTCTTCGTTAAAACCAACTGgtaaactcagaagttaacccgcaggttgcaaatgaagtgttgactgattcagttgcatcgacgttggtagcgcgtggaagattttccacgatgctagatctaaatttaatttgaagatgaaaatttaatttggttgtggatgtgaattgagagagcttattgatacag

Basic information

species Physcomitrella patens
transcript PP1S83_158V6.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100421173|gb|BY976110.1|BY976110
EST:     GCCACTCGCTACGATACAGACGCGGGCTCCTTCTTCGTTAAAACCAACTG                         GGACACTGGGCCAGCAATTTTTGAAGCTGAAGCTGCCGGGTTGAATGCCAT
genomic: GCCACTCGCTACGATACAGACGCGGGCTCCTTCTTCGTTAAAACCAACTGgtaaactcag ... attgatacagGGACACTGGGCCAGCAATGTTTGAAGCTGAAGCTGCCGGGTTGAATGCCAT
EST: gi|100371199|gb|BY985987.1|BY985987
EST:     GCCACTCGCTACGATACAGACGCGGGCTCCTTCTTCGTTAAAACCAACTG                         GGACACTGGGCCAGCAATGTTTGAAGCCGAAGCTGCCGGGTTGAATGCCAT
genomic: GCCACTCGCTACGATACAGACGCGGGCTCCTTCTTCGTTAAAACCAACTGgtaaactcag ... attgatacagGGACACTGGGCCAGCAATGTTTGAAGCTGAAGCTGCCGGGTTGAATGCCAT
EST: gi|100417823|gb|BY975671.1|BY975671
EST:     CCACTCGCTACGATACAGACGCGGGCTCCTTTCTTCGT-AAAACCAACTG                         GGACACTGGGCCAGCAATGTTTGAAGCTGAAGCTGCCGGGTTGAATGCCAT
genomic: CCACTCGCTACGATACAGACGCGGGCTCCTT-CTTCGTTAAAACCAACTGgtaaactcag ... attgatacagGGACACTGGGCCAGCAATGTTTGAAGCTGAAGCTGCCGGGTTGAATGCCAT
EST: gi|208353856|gb|DC906544.1|DC906544
EST:     GCCACTCGCTACGATACAGACGCGGGCTCCTTCTTCGTTAAAACCAACTG                         GGACACTGGGCCAGCAATGTTTGAAGCTGAAGCTGCCGGGTTGAATGCCAT
genomic: GCCACTCGCTACGATACAGACGCGGGCTCCTTCTTCGTTAAAACCAACTGgtaaactcag ... attgatacagGGACACTGGGCCAGCAATGTTTGAAGCTGAAGCTGCCGGGTTGAATGCCAT
EST: gi|18347323|gb|BJ179369.1|BJ179369
EST:     GCCACTCGCTACGATACAGACGCGGGCTCCTTCTTCGTTAAAACCAACTG                         GGACACTGGGCCAGCAATGTTTGAAGCTGAAGCTGCCGGGTTGAATGCCAT
genomic: GCCACTCGCTACGATACAGACGCGGGCTCCTTCTTCGTTAAAACCAACTGgtaaactcag ... attgatacagGGACACTGGGCCAGCAATGTTTGAAGCTGAAGCTGCCGGGTTGAATGCCAT
EST: gi|100445174|gb|BY964473.1|BY964473
EST:     GCCACTCGCTACGATACAGACGCGGGCTCCTTCTTCGTTAAAACCAACTG                         GGACACTGGGCCAGCAATGTTTGAAGCTGAAGCTGCCGGGNTGAATGCCAT
genomic: GCCACTCGCTACGATACAGACGCGGGCTCCTTCTTCGTTAAAACCAACTGgtaaactcag ... attgatacagGGACACTGGGCCAGCAATGTTTGAAGCTGAAGCTGCCGGGTTGAATGCCAT