1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GATTGAAAAAGGCTGAGAAAGGAGAGgtacgtttgactttacatgatttttaaatgcacttattcgttagcgatgttctcatggcttcaatttgaccattttggggatgttctcgatttggtttat...
species | Physcomitrella patens |
transcript | PP1S80_3V6.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GAAGGATTGAAAAAGGCTGAGAAAGGAGAG AACAAGGCACCATCAAAAGCATCTCTCATGTTTTCTGGAACTCAGGAGAAGEST: gi|208387435|gb|DC949220.1|DC949220
genomic: GAAGGATTGAAAAAGGCTGAGAAAGGAGAGgtacgtttga ... tgtgttgcagAACAAGGCACCATCAAAAGCATCTCTCATGTTTTCTGGAACTCAGGAGAAG
EST: GATTGAAAAAGGCTGAGAAAGGAGAG AACAAGGCACCATCAAAAGCATCTCTCATGTTTTCTGGAACTCAGGAGAAGEST: gi|208365845|gb|DC955448.1|DC955448
genomic: GATTGAAAAAGGCTGAGAAAGGAGAGgtacgtttga ... tgtgttgcagAACAAGGCACCATCAAAAGCATCTCTCATGTTTTCTGGAACTCAGGAGAAG
EST: AAAAGGCTGAGAAAGGAGAG ANCANGNC-CCATCAAAAGCATCTCTCATGTTTTCTGGAACTCAGGAGAAGEST: gi|67695765|gb|BJ955998.1|BJ955998
genomic: AAAAGGCTGAGAAAGGAGAGgtacgtttga ... tgtgttgcagAACAAGGCACCATCAAAAGCATCTCTCATGTTTTCTGGAACTCAGGAGAAG
EST: GATTGAAAAAGGCTGAGAAAGGAGAG AACAAGGCACCATCAAAAGCATCTCTCATGTTTTCTGGAACTCAGGAGAAGEST: gi|162264936|gb|FC441439.1|FC441439
genomic: GATTGAAAAAGGCTGAGAAAGGAGAGgtacgtttga ... tgtgttgcagAACAAGGCACCATCAAAAGCATCTCTCATGTTTTCTGGAACTCAGGAGAAG
EST: GATTGAAAAAGGCTGAGAAAGGAGAG AACAAGGCACCATCAAAAGCATCTCTCATGTTTTCTGGAACTCAGGAGAAGEST: gi|162201813|gb|FC377747.1|FC377747
genomic: GATTGAAAAAGGCTGAGAAAGGAGAGgtacgtttga ... tgtgttgcagAACAAGGCACCATCAAAAGCATCTCTCATGTTTTCTGGAACTCAGGAGAAG
EST: GATTGAAAAAGGCTGAGAAAGGAGAG AACAAGGCACCATCAAAAGCATCTCTCATGTTTTCTGGAACTCAGGAGAAGEST: gi|162155897|gb|FC332446.1|FC332446
genomic: GATTGAAAAAGGCTGAGAAAGGAGAGgtacgtttga ... tgtgttgcagAACAAGGCACCATCAAAAGCATCTCTCATGTTTTCTGGAACTCAGGAGAAG
EST: GATTGAAAAAGGCTGAGAAAGGAGAG AACAAGGCACCATCAAAAGCATCTCTCATGTTTTCTGGAACTCAGGAGAAGEST: gi|208379342|gb|DC922928.1|DC922928
genomic: GATTGAAAAAGGCTGAGAAAGGAGAGgtacgtttga ... tgtgttgcagAACAAGGCACCATCAAAAGCATCTCTCATGTTTTCTGGAACTCAGGAGAAG
EST: AAGGCTGAGAAAGGAGAG AACAAGGCACCATCAAAAGCATCTCTCATGTTTTCTGGAACTCAGGAGAAGEST: gi|162259609|gb|FC435536.1|FC435536
genomic: AAGGCTGAGAAAGGAGAGgtacgtttga ... tgtgttgcagAACAAGGCACCATCAAAAGCATCTCTCATGTTTTCTGGAACTCAGGAGAAG
EST: GATTGAAAAAGGCTGAGAAAGGAGAG ANCAAGGCACCATCAAAAGCATCTCTCATG-TTTCTGGAACTCAGGAGAAGEST: gi|67697433|gb|BJ957666.1|BJ957666
genomic: GATTGAAAAAGGCTGAGAAAGGAGAGgtacgtttga ... tgtgttgcagAACAAGGCACCATCAAAAGCATCTCTCATGTTTTCTGGAACTCAGGAGAAG
EST: TGAAGGATTGAAAAANGGCTGAGAAAGGAGAG AACAAGGCACCATCAAAAGCATCTCTCATGTTTTCTGGAACTCAGGAGAAGEST: gi|162155898|gb|FC332447.1|FC332447
genomic: TGAAGGATTGAAAAA-GGCTGAGAAAGGAGAGgtacgtttga ... tgtgttgcagAACAAGGCACCATCAAAAGCATCTCTCATGTTTTCTGGAACTCAGGAGAAG
EST: GATTGAAAAAGGCTGAGAAAGGAGAG AACAAGGCACCATCAAAAGCATCTCTCATGTTTTCTGGAACTCAGGAGAAGEST: gi|67698662|gb|BJ958895.1|BJ958895
genomic: GATTGAAAAAGGCTGAGAAAGGAGAGgtacgtttga ... tgtgttgcagAACAAGGCACCATCAAAAGCATCTCTCATGTTTTCTGGAACTCAGGAGAAG
EST: GATTGAAAAAGGCTGAGAAAGGAGAG AACAAGGCACCATCAAAAGCATCTCTCATGTTTTCTGGAACTCAGGAGAAGEST: gi|162150285|gb|FC326370.1|FC326370
genomic: GATTGAAAAAGGCTGAGAAAGGAGAGgtacgtttga ... tgtgttgcagAACAAGGCACCATCAAAAGCATCTCTCATGTTTTCTGGAACTCAGGAGAAG
EST: GATTGAAAAAGGCTGAGAAAGGAGAG AACAAGGCACCATCAAAAGCATCTCTCATGTTTTCTGGAACTCAGGAGAAGEST: gi|162243581|gb|FC419518.1|FC419518
genomic: GATTGAAAAAGGCTGAGAAAGGAGAGgtacgtttga ... tgtgttgcagAACAAGGCACCATCAAAAGCATCTCTCATGTTTTCTGGAACTCAGGAGAAG
EST: GATTGAAAAAGGCTGAGAAAGGAGAG AACAAGGCACCATCAAAAGCATCTCTCATGTTTTCTGGAACTCAGGAGAAGEST: gi|162211924|gb|FC387796.1|FC387796
genomic: GATTGAAAAAGGCTGAGAAAGGAGAGgtacgtttga ... tgtgttgcagAACAAGGCACCATCAAAAGCATCTCTCATGTTTTCTGGAACTCAGGAGAAG
EST: GATTGAAAAAGGCTGAGAAAGGAGAG AACAAGGCACCATCAAAAGCATCTCTCATGTTTTCTGGAACTCAGGAGAAGEST: gi|162201814|gb|FC377748.1|FC377748
genomic: GATTGAAAAAGGCTGAGAAAGGAGAGgtacgtttga ... tgtgttgcagAACAAGGCACCATCAAAAGCATCTCTCATGTTTTCTGGAACTCAGGAGAAG
EST: GATTGAAAAAGGCTGAGAAAGGAGAG AACAAGGCACCATCAAAAGCATCTCTCATGTTTTCTGGAACTCAGGAGAAG
genomic: GATTGAAAAAGGCTGAGAAAGGAGAGgtacgtttga ... tgtgttgcagAACAAGGCACCATCAAAAGCATCTCTCATGTTTTCTGGAACTCAGGAGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATTGAAAAAGGCTGAGAAAGGAGAGgtacgtttgactttacatgatttttaaatgcacttattcgttagcgatgttctcatggcttcaatttgaccattttggggatgttctcgatttggtttat
- - - - - - - - - AAGGAG
- - - - - - - - - AGGAGA