1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GTCGCTGGCGGACTTGCAGAACGACGAGGACCAGGCTTTCCGGAAGATCAAGCTGAGGGCGGAGGACGTGCAGGGGAAGAATGTGCTGACGAACTTCTGGgtacgtggtgtgcgacggggtgtgagtgtgagtgtgggttgaattaggtgagagggtggtgggcgcaacgaaggaaggaaggaagggaggaaggaagagg...
species | Physcomitrella patens |
transcript | PP1S80_113V6.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AGCTGAGGGCGGAGGACGTGCAGGGGAAGAATGTGCTGACGAACTTCTGG GGCATGGACCTGACGACGGACAAGCTGCGGTCGCTGGTGCGGAAGTGGCAGEST: gi|67719105|gb|BJ969364.1|BJ969364
genomic: AGCTGAGGGCGGAGGACGTGCAGGGGAAGAATGTGCTGACGAACTTCTGGgtacgtggtg ... atggatgcagGGCATGGACCTGACGACGGACAAGCTGCGGTCGCTGGTGCGGAAGTGGCAG
EST: AGCTGAGGGCGGAGGACGTGCAGGGGAAGAATGTGCTGACGAACTTCTGG GGCATGGACCTGACGACGGACAAGCTGCGGTCGCTGGTGCGGAAGTGGCAGEST: gi|67695971|gb|BJ956204.1|BJ956204
genomic: AGCTGAGGGCGGAGGACGTGCAGGGGAAGAATGTGCTGACGAACTTCTGGgtacgtggtg ... atggatgcagGGCATGGACCTGACGACGGACAAGCTGCGGTCGCTGGTGCGGAAGTGGCAG
EST: AGCTGAGGGCGGAGGACGTGCAGGGGAAGAATGTGCTGACGAACTTCTGG GGCATGGACCTGACGACGGACAAGCTGCGGTCGCTGGTGCGGAAGTGGCAGEST: gi|37824860|gb|BJ582926.1|BJ582926
genomic: AGCTGAGGGCGGAGGACGTGCAGGGGAAGAATGTGCTGACGAACTTCTGGgtacgtggtg ... atggatgcagGGCATGGACCTGACGACGGACAAGCTGCGGTCGCTGGTGCGGAAGTGGCAG
EST: AGCTGAGGGCGGAGGACGTGCAGGGGAAGAATGTGCTGACGAACTTCTGG GGCATGGACCTGACGACGGACAAGCTGCGGTCGCTGGTGCGGAAGTGGCAGEST: gi|67726288|gb|BJ976547.1|BJ976547
genomic: AGCTGAGGGCGGAGGACGTGCAGGGGAAGAATGTGCTGACGAACTTCTGGgtacgtggtg ... atggatgcagGGCATGGACCTGACGACGGACAAGCTGCGGTCGCTGGTGCGGAAGTGGCAG
EST: AGCTGAGGGCGGAGGACGTGCAGGGGAAGAATGTGCTGACGAACTTCTGG GGCATGGACCTGACGACGGACAAGCTGCGGTCGCTGGTGCGGAAGTGGCAGEST: gi|15729153|gb|BI741168.1|BI741168
genomic: AGCTGAGGGCGGAGGACGTGCAGGGGAAGAATGTGCTGACGAACTTCTGGgtacgtggtg ... atggatgcagGGCATGGACCTGACGACGGACAAGCTGCGGTCGCTGGTGCGGAAGTGGCAG
EST: ACGTGCAGGGGAAGAATGTGCTGACGAACTTCTGG GGCATGGACCTGACGACGGACAAGCTGCGGTCGCTGGTGCGGAAGTGGCACEST: gi|67717781|gb|BJ968040.1|BJ968040
genomic: ACGTGCAGGGGAAGAATGTGCTGACGAACTTCTGGgtacgtggtg ... atggatgcagGGCATGGACCTGACGACGGACAAGCTGCGGTCGCTGGTGCGGAAGTGGCAG
EST: AGCTGAGGGCGGAGGACGTGCAGGGGAAGAATGTGCTGACGAACTTCTGG GGCATGGACCTGACGACGGACAAGCTGCGGTCGCTGGTGCGGAAGTGGCAGEST: gi|18345746|gb|BJ177789.1|BJ177789
genomic: AGCTGAGGGCGGAGGACGTGCAGGGGAAGAATGTGCTGACGAACTTCTGGgtacgtggtg ... atggatgcagGGCATGGACCTGACGACGGACAAGCTGCGGTCGCTGGTGCGGAAGTGGCAG
EST: AGCTGAGGGCGGAGGACGTGCAGGGGAAGAATGTGCTGACGAACTTCTGG GGCATGGACCTGACGACGGACAAGCTGCGGTCGCTGGTGCGGAAGTGGCAG
genomic: AGCTGAGGGCGGAGGACGTGCAGGGGAAGAATGTGCTGACGAACTTCTGGgtacgtggtg ... atggatgcagGGCATGGACCTGACGACGGACAAGCTGCGGTCGCTGGTGCGGAAGTGGCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCGCTGGCGGACTTGCAGAACGACGAGGACCAGGCTTTCCGGAAGATCAAGCTGAGGGCGGAGGACGTGCAGGGGAAGAATGTGCTGACGAACTTCTGGgtacgtggtgtgcgacggggtgtgagtgtgagtgtgggttgaattaggtgagagggtggtgggcgcaacgaaggaaggaaggaagggaggaaggaagagg
- - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA