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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATTCGTGAGAAGAGATCTTCTGTCACTGTTCTATTGTGTGGAACAAGTGGGTGTGGCAAGTCGACATTGGCGACACTGCTGgtacgttctctccctgtgtttcagtgagttgctctacagtgtgttgcgtgttgctgtacttggtatgtagctagatattcatatgacgatggcaataaggatagtgacccatatacctctcatagcacgatttgtcaaagtaacggtgatttcagaccctaatcgactacccctaaatcttgtgagaattgcag

Basic information

species Physcomitrella patens
transcript PP1S7_501V6.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S7_501V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: Vv08s0040g01610.t01 (Vitis vinifera), 5'ss of exon 3
TATTCGTGAGAAGAGATCTTCTGTCACTGTTCTATTGTGTGGAACAAGTGGGTGTGGCAAGTCGACATTGGCGACACTGCTGgtacgttctctccctgtgtttcagtgagttgctctacagtgtgttgcgtgttgctgtacttggtatgtagctagatatt-catatgacgatggcaataaggatagtgacccatatacctctcatagcacgatttgtcaaagtaacggtgatttcagaccctaatcgactacccctaaatcttgtgagaattgcag
 || || || | |      |||||||||||| |||| || || ||||||||||||||||| || || ||| | ||| ||||||||| | ||   ||    |   ||    |   || | | | ||  |  ||||| | | | |  | | |   |     |  | ||| |   | |   ||  || |                                                                                           
GATCCGAGAAAGGGAGGAGTCTGTCACTGTTTTATTATGCGGCACAAGTGGGTGTGGCAAATCTACTTTGTCCACATTGCTGgtacttacttcaccaccat---agattttctttccataat-tgaagtttgttggttttcctcat-tatccttgcccttggcttatcatctttgttttattgagaa------------------------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18332576|gb|BJ164589.1|BJ164589
EST:     TATTGTGTGGAACAAGTGGGTGTGGCAAGTCGACATTGGCGACACTGCTG                         GGACAAAGGCTTGGGGTGACCACAGTAGTATCCACCGACTCTGTCCGGCAC
genomic: TATTGTGTGGAACAAGTGGGTGTGGCAAGTCGACATTGGCGACACTGCTGgtacgttctc ... agaattgcagGGACAAAGGCTTGGGGTGACCACAGTAGTATCCACCGACTCTGTCCGGCAC