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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCCATGTGTGTTTTCATCAACATCGGAGCTCTTGTTTGGACTTTACCTAATTTATTTTTTCAGAGTATTTGAAAGGCAAATTGGGTCGAATAAATACTTGgtatggcttgttcttctcatcttgcattcctccacctttcgtggataggatgatatactaatgctgacttgctgacagagtgttaatgtatatagtgcgaactgttctgatccctgtcctttccttacgaactaaccaaagcaagtggatctgacag

Basic information

species Physcomitrella patens
transcript PP1S78_54V6.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208346567|gb|DC916833.1|DC916833
EST:     GGTCGAATAAATACNTG                         -TTTTTGTGTTATTTTCAACAATAATCTCGACAACCCTTGAAGTGATCGCA
genomic: GGTCGAATAAATACTTGgtatggcttg ... gatctgacagTTTTTTGTGTTATTTTCAACAATAATCTCGACAACCCTTGAAGTGATCGCA
EST: gi|37851035|gb|BJ609043.1|BJ609043
EST:     TCAGAGTATTTGAAAGGCAAATTGGGTCGAATAAATACTNG                         N
genomic: TCAGAGTATTTGAAAGGCAAATTGGGTCGAATAAATACTTGgtatggcttg ... gatctgacag-
EST: gi|37851035|gb|BJ609043.1|BJ609043
EST:     TCAGAGTATTTGAAAGGCAAATTGGGTCGAATAAATACTNG                         N
genomic: TCAGAGTATTTGAAAGGCAAATTGGGTCGAATAAATACTTGgtatggcttg ... gatctgacag-
EST: gi|37842140|gb|BJ600148.1|BJ600148
EST:     TTANNNNNNNCAGAGTATTTGAAAGGCAAATTGGGTCGAATAAATACTTG                         TTTTTTGTGTTATTTTCAACAATAATCTCGACAACCCTTGAAGTGATCGCA
genomic: TTA-TTTTTTCAGAGTATTTGAAAGGCAAATTGGGTCGAATAAATACTTGgtatggcttg ... gatctgacagTTTTTTGTGTTATTTTCAACAATAATCTCGACAACCCTTGAAGTGATCGCA