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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGTGGATGCATCTTGGTATATGCCCAATGAAAACCGCAACACACTTGAAGACTACAAGgtacaattcactttaaatgattcattacaatttaatcctctcgagtagatctatctaattgccaagtcaaaatccactaggcttgtaattggggctgatt...

Basic information

species Physcomitrella patens
transcript PP1S78_4V6.2
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67716660|gb|BJ966920.1|BJ966920
EST:     CATCTTGGTATATGCCCAATGAAAACCGCAACACACTTGAAGACTACAAG                         GAAGAGCACATTCCTGGAGCAGTTTTCTTTGACCTCGACAAGATTTCCGAT
genomic: CATCTTGGTATATGCCCAATGAAAACCGCAACACACTTGAAGACTACAAGgtacaattca ... cttcttacagGAAGAGCACATTCCTGGAGCAGTTTTCTTTGACCTCGACAAGATTTCCGAT
EST: gi|162268669|gb|FC445166.1|FC445166
EST:     CATCTTGGTATATGCCCAATGAAAACCGCAACACACTTGAAGACTACAAG                         GAAGAGCACATTCCTGGAGCAGTTTTCTTTGACCTCGACAAGATTTCCGAT
genomic: CATCTTGGTATATGCCCAATGAAAACCGCAACACACTTGAAGACTACAAGgtacaattca ... cttcttacagGAAGAGCACATTCCTGGAGCAGTTTTCTTTGACCTCGACAAGATTTCCGAT
EST: gi|67571995|gb|BJ944819.1|BJ944819
EST:     CATCTTGGTATATGCCCAATGAAAACCGCAACACACTTGAAGACTACAAG                         GAAGAGCACATTCCTGGAGCAGTTTTCTTTGACCTCGACAAGATTTCCGAT
genomic: CATCTTGGTATATGCCCAATGAAAACCGCAACACACTTGAAGACTACAAGgtacaattca ... cttcttacagGAAGAGCACATTCCTGGAGCAGTTTTCTTTGACCTCGACAAGATTTCCGAT
EST: gi|100360013|gb|BY965985.1|BY965985
EST:     CATCTTGGTATATGCCCAATGAAAACCGCAACACACTTGAAGACTACAAG                         GAAGAGCACATTCCTGGAGCAGTTTTCTTTGACCTCGACAAGATTTCCGAT
genomic: CATCTTGGTATATGCCCAATGAAAACCGCAACACACTTGAAGACTACAAGgtacaattca ... cttcttacagGAAGAGCACATTCCTGGAGCAGTTTTCTTTGACCTCGACAAGATTTCCGAT
EST: gi|100399488|gb|BY972744.1|BY972744
EST:     CATCTTGGTATATGCCCAATGAAAACCGCA-CACACTTGAAGACTACNAG                         GAAGAGCACATTCCTGGAGCAGTTTTCTTTGACCTCGGACA-GATTTCCGA
genomic: CATCTTGGTATATGCCCAATGAAAACCGCAACACACTTGAAGACTACAAGgtacaattca ... cttcttacagGAAGAGCACATTCCTGGAGCAGTTTTCTTTGACCTCG-ACAAGATTTCCGA
EST: gi|100418022|gb|BY993298.1|BY993298
EST:     CATCTTGGTATATGCCCAATGAAAACCGCAACACACTTGAAGACTACNAG                         GAAGAGCACATTCCTGGAGCAGTTTTCTTTGACCTCGACAAGATTTCCGAT
genomic: CATCTTGGTATATGCCCAATGAAAACCGCAACACACTTGAAGACTACAAGgtacaattca ... cttcttacagGAAGAGCACATTCCTGGAGCAGTTTTCTTTGACCTCGACAAGATTTCCGAT
EST: gi|100412842|gb|BY992463.1|BY992463
EST:     CATCTTGGTATATGCCCAATGAAAACCGCAACACACTTGAAGACTACAAG                         GAAGAGCACATTCCTGGAGCAGTTTTCTTTGACCTCGACAAGATTTCCGAT
genomic: CATCTTGGTATATGCCCAATGAAAACCGCAACACACTTGAAGACTACAAGgtacaattca ... cttcttacagGAAGAGCACATTCCTGGAGCAGTTTTCTTTGACCTCGACAAGATTTCCGAT
EST: gi|100396273|gb|BY990048.1|BY990048
EST:     CATCTTGGTATATGCCCAATGAAAACCGCAACACACTTGAAGACTACAAG                         GAAGAGCACATTCCTGGAGCAGTTTTCTTTGACCTCGACAAGATTTCCGAT
genomic: CATCTTGGTATATGCCCAATGAAAACCGCAACACACTTGAAGACTACAAGgtacaattca ... cttcttacagGAAGAGCACATTCCTGGAGCAGTTTTCTTTGACCTCGACAAGATTTCCGAT
EST: gi|208376166|gb|DC906797.1|DC906797
EST:     CATCTTGGTATATGCCCAATGAAAACCGCAACACACTTGAAGACTACAAG                         GAAGAGCACATTCCTGGAGCAGTTTTCTTTGACCTCGACAAGATTTCCGAT
genomic: CATCTTGGTATATGCCCAATGAAAACCGCAACACACTTGAAGACTACAAGgtacaattca ... cttcttacagGAAGAGCACATTCCTGGAGCAGTTTTCTTTGACCTCGACAAGATTTCCGAT
EST: gi|100374119|gb|BY985671.1|BY985671
EST:     CATCTTGGTATATGCCCAATGAAAACCGCAACACACTTGAAGACTACAAG                         GAAGAGCACATTCCTGGAGCAG
genomic: CATCTTGGTATATGCCCAATGAAAACCGCAACACACTTGAAGACTACAAGgtacaattca ... cttcttacagGAAGAGCACATTCCTGGAGCAG
EST: gi|67716419|gb|BJ966679.1|BJ966679
EST:     CATCTTGGTATATGCCCAATGAAAACCGCAACACACTTGAAGACTACAAG                         GAAGAGCACATTCCTGGAGCAGTTTTCTTTGACCTCGACNAGATTTCCGAT
genomic: CATCTTGGTATATGCCCAATGAAAACCGCAACACACTTGAAGACTACAAGgtacaattca ... cttcttacagGAAGAGCACATTCCTGGAGCAGTTTTCTTTGACCTCGACAAGATTTCCGAT
EST: gi|208360175|gb|DC939186.1|DC939186
EST:     CATCTTGGTATATGCCCAATGAAAACCGCAACACACTTGAAGACTACAAG                         GAAGAGCACATTCCTGGAGCAGTTTTCTTTGACCTCGACAAGATTTCCGAT
genomic: CATCTTGGTATATGCCCAATGAAAACCGCAACACACTTGAAGACTACAAGgtacaattca ... cttcttacagGAAGAGCACATTCCTGGAGCAGTTTTCTTTGACCTCGACAAGATTTCCGAT
EST: gi|100411082|gb|BY956316.1|BY956316
EST:     ATCTTGGTATATGCCCAATGAAAACCGCAACACACTTTGA-GACTACAAG                         GGAGAGCACATTTCTTGGAGCAGTTTTCTGTGACTTCGACAAGATTTCCGA
genomic: ATCTTGGTATATGCCCAATGAAAACCGCAACACACTT-GAAGACTACAAGgtacaattca ... cttcttacagGAAGAGCACATTCCT-GGAGCAGTTTTCTTTGACCTCGACAAGATTTCCGA
EST: gi|162182755|gb|FC359502.1|FC359502
EST:     CATCTTGGTATATGCCCAATGAAAACCGCAACACACTTGAAGACTACAAG                         GAAGAGCACATTCCTGGAGCAGTTTTCTTTGACCTCGACAAGATTTCCGAT
genomic: CATCTTGGTATATGCCCAATGAAAACCGCAACACACTTGAAGACTACAAGgtacaattca ... cttcttacagGAAGAGCACATTCCTGGAGCAGTTTTCTTTGACCTCGACAAGATTTCCGAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTGGTGGATGCATCTTGGTATATGCCCAATGAAAACCGCAACACACTTGAAGACTACAAGgtacaattcactttaaatgattcattacaatttaatcctctcgagtagatctatctaattgccaagtcaaaatccactaggcttgtaattggggctgatt

- - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - -  TGAAGA