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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCAATTTCACCCTTGGATGGCCGTTACGGGAGCAAACTGAAGCCGCTGCGGGCAATCTTCAGTGAATTTGGGCTCATTAGATACCGAGTTCTTGTCGAGgtatccttttcattatcatctaatcgctgtaggccatggagacaggatgttagctttaatggattggcacctttcacgaataaatcgtcctttttctttg...

Basic information

species Physcomitrella patens
transcript PP1S78_3V6.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67572840|gb|BJ945664.1|BJ945664
EST:     GGGCAATCTTCAGTGAATTTGGGCTCATTAGATACCGAGTTCTTGTCGAG                         GTTCGTTGGTTGCAGATGCTGTCCAACAACTCTGGAATT
genomic: GGGCAATCTTCAGTGAATTTGGGCTCATTAGATACCGAGTTCTTGTCGAGgtatcctttt ... gcgctttcagGTTCGTTGGTTGCAGATGCTGTCCAACAACTCTGGAATT
EST: gi|162170405|gb|FC346797.1|FC346797
EST:     GGGCAATCTTCAGTGAATTTGGGCTCATTAGATACCGAGTTCTTGTCGAG                         GTTCGTTGGTTGCAGATGCTGTCCAACAACTCTGGAATTGAGGAAGTACCT
genomic: GGGCAATCTTCAGTGAATTTGGGCTCATTAGATACCGAGTTCTTGTCGAGgtatcctttt ... gcgctttcagGTTCGTTGGTTGCAGATGCTGTCCAACAACTCTGGAATTGAGGAAGTACCT
EST: gi|162167459|gb|FC343669.1|FC343669
EST:     GGGCAATCTTCAGTGAATTTGGGCTCATTAGATACCGAGTTCTTGTCGAG                         GTTCGTTGGTTGCAGATGCTGTCCAACAACTCTGGAATTGAGGAAGTACCT
genomic: GGGCAATCTTCAGTGAATTTGGGCTCATTAGATACCGAGTTCTTGTCGAGgtatcctttt ... gcgctttcagGTTCGTTGGTTGCAGATGCTGTCCAACAACTCTGGAATTGAGGAAGTACCT