1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TCTGGAGGTTGGATGTGGCAGTGGTTATGTCATTACCTCACTAGCCTTGATCCTCGCAGATGAATGCCATGCTCAGTTTTTCGCTACGGACATCAGTCAGgtattttcattctcctgtcgagtttgtttggtcagtatattgtgcactctgtagttaggatattcaattaaattccttatgttgaaactttcacttgaag...
species | Physcomitrella patens |
transcript | PP1S78_28V6.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CCTCGCAGATGAATGCCATGCTCAGTTTTTTCGCTACGGACATCAGTCAG ACAGCCGCGCAGGTGACGCGTGAGACCTTATCAGCGCATGGACTCCAGGCTEST: gi|37850124|gb|BJ608132.1|BJ608132
genomic: CCTCGCAGATGAATGCCATGCTCAG-TTTTTCGCTACGGACATCAGTCAGgtattttcat ... ttctcgacagACAGCCGCGCAGGTGACGCGTGAGACCTTATCAGCGCATGGACTCCAGGCT
EST: CGGACATCAGTCAG ACAGCCGCGCAGGTGACGCGTGAGACCTTATCAGCGCATGGACTCCAGGCTEST: gi|67696662|gb|BJ956895.1|BJ956895
genomic: CGGACATCAGTCAGgtattttcat ... ttctcgacagACAGCCGCGCAGGTGACGCGTGAGACCTTATCAGCGCATGGACTCCAGGCT
EST: TCCTCGCAGATGAATGCCATGCTCAGTTTTTCGCTACGGACATCAGTCAG ACAGCCGCGCAGGTGACGCGTGAGACCTTATCAGCGCATGGACTCCAGGCTEST: gi|37823861|gb|BJ581927.1|BJ581927
genomic: TCCTCGCAGATGAATGCCATGCTCAGTTTTTCGCTACGGACATCAGTCAGgtattttcat ... ttctcgacagACAGCCGCGCAGGTGACGCGTGAGACCTTATCAGCGCATGGACTCCAGGCT
EST: TCGCAGATGAATGCCATGCTCAGTTTTTCGCTACGGACATCAGTCAG ACAGCCGCGCAGGTGACGCGTGAGACCTTATCAGCGCATGGACTCCAGGCTEST: gi|162193740|gb|FC371267.1|FC371267
genomic: TCGCAGATGAATGCCATGCTCAGTTTTTCGCTACGGACATCAGTCAGgtattttcat ... ttctcgacagACAGCCGCGCAGGTGACGCGTGAGACCTTATCAGCGCATGGACTCCAGGCT
EST: TCCTCGCAGATGAATGCCATGCTCAGTTTTTCGCTACGGACATCAGTCAG ACAGCCGCGCAGGTGACGCGTGAGACCTTATCAGCGCATGGACTCCAGGCTEST: gi|162223988|gb|FC400346.1|FC400346
genomic: TCCTCGCAGATGAATGCCATGCTCAGTTTTTCGCTACGGACATCAGTCAGgtattttcat ... ttctcgacagACAGCCGCGCAGGTGACGCGTGAGACCTTATCAGCGCATGGACTCCAGGCT
EST: TCAGTTTTTCGCTACGGACATCAGTCAG ACAGCCGCGCAGGTGACGCGTGAGACCTTATCAGCGCATGGACTCCAGGCTEST: gi|7583621|gb|AW699529.1|AW699529
genomic: TCAGTTTTTCGCTACGGACATCAGTCAGgtattttcat ... ttctcgacagACAGCCGCGCAGGTGACGCGTGAGACCTTATCAGCGCATGGACTCCAGGCT
EST: TCCTCGCAGATGAATGCCATGCTCAGTTTTTCGCTACGGACATCAGTCAG ACAGCCGCGCAGGTGACGCGTGAGACCTTATCAGCGCATGGACTCCAGGCTEST: gi|37836037|gb|BJ594045.1|BJ594045
genomic: TCCTCGCAGATGAATGCCATGCTCAGTTTTTCGCTACGGACATCAGTCAGgtattttcat ... ttctcgacagACAGCCGCGCAGGTGACGCGTGAGACCTTATCAGCGCATGGACTCCAGGCT
EST: TCCTCGCAGATGAATGCCATGCTCAGTTTTTCGCTACGGACATCAGTCAG ACAGCCGCGCAGGGTGACGCGTGAGACCTTATCAGCGCATGGACTCCAGGCEST: gi|37826909|gb|BJ584921.1|BJ584921
genomic: TCCTCGCAGATGAATGCCATGCTCAGTTTTTCGCTACGGACATCAGTCAGgtattttcat ... ttctcgacagACAGCCGCGCA-GGTGACGCGTGAGACCTTATCAGCGCATGGACTCCAGGC
EST: CTACGGACATCAGTCAG ACAGCCGCGCAGGGTGACGCGTGAGACCTTATCAGCGCATGGACTCCAGGC
genomic: CTACGGACATCAGTCAGgtattttcat ... ttctcgacagACAGCCGCGCA-GGTGACGCGTGAGACCTTATCAGCGCATGGACTCCAGGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTGGAGGTTGGATGTGGCAGTGGTTATGTCATTACCTCACTAGCCTTGATCCTCGCAGATGAATGCCATGCTCAGTTTTTCGCTACGGACATCAGTCAGgtattttcattctcctgtcgagtttgtttggtcagtatattgtgcactctgtagttaggatattcaattaaattccttatgttgaaactttcacttgaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG