Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAGACCCACGGAGTATAAGACTTCTCGTCTTCACCGGCACAAGAAAACTGTGAACCGCGCGTATGGTGGCACCATGGCAGGGTCTGCAGTGCGTGAGCGgtatgttacatcccaggggatttccttttggtcaatttagcgcagtggtgatctgacccatgacttccgattatccggagtgtccttggtcaaatgacta...

Basic information

species Physcomitrella patens
transcript PP1S76_47V6.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7583570|gb|AW699479.1|AW699479
EST:     GTGAACCGCGCGTATGGTGGCACCATGGCAGGGTCTGCAGTGCGTGAGCG                         CATCATTCGAGCATTCCTTGTCGAGGAGCAGAAAATCGTAAAGAAGGTTCT
genomic: GTGAACCGCGCGTATGGTGGCACCATGGCAGGGTCTGCAGTGCGTGAGCGgtatgttaca ... cgtgtttcagCATCATTCGAGCATTCCTTGTCGAGGAGCAGAAAATCGTAAAGAAGGTTCT
EST: gi|37826981|gb|BJ584993.1|BJ584993
EST:     GTGAACCGCGCGTATGGTGGCACCATGGCAGGGTCTGCAGTGCGTGAGCG                         CATCATTCGAGCATTCCTTGTCGAGGAGCAGAAAATCGTAAAGAAGGTTCT
genomic: GTGAACCGCGCGTATGGTGGCACCATGGCAGGGTCTGCAGTGCGTGAGCGgtatgttaca ... cgtgtttcagCATCATTCGAGCATTCCTTGTCGAGGAGCAGAAAATCGTAAAGAAGGTTCT
EST: gi|18368465|gb|BJ200550.1|BJ200550
EST:     GTGAACCGCGCGTATGGTGGCACCATGGCAGGGTCTGCAGTGCGTGAGCG                         CATCATTCGAGCATTCCTTGTCGAGGAGCAGAAAATCGTAAAGAAGGTTCT
genomic: GTGAACCGCGCGTATGGTGGCACCATGGCAGGGTCTGCAGTGCGTGAGCGgtatgttaca ... cgtgtttcagCATCATTCGAGCATTCCTTGTCGAGGAGCAGAAAATCGTAAAGAAGGTTCT
EST: gi|162158517|gb|FC334520.1|FC334520
EST:     GTGAACCGCGCGTATGGTGGCACCATGGCAGGGTCTGCAGTGCGTGAGCG                         CATCATTCGAGCATTCCTTGTCGAGGAGCAGAAAATCGTAAAGAAGGTTCT
genomic: GTGAACCGCGCGTATGGTGGCACCATGGCAGGGTCTGCAGTGCGTGAGCGgtatgttaca ... cgtgtttcagCATCATTCGAGCATTCCTTGTCGAGGAGCAGAAAATCGTAAAGAAGGTTCT
EST: gi|7286626|gb|AW599113.1|AW599113
EST:     GTGAACCGCGCGTATGGTGGCACCATGGCAGGGTCTGCAGTGCGTGAGCG                         CATCATTCGAGCATTCCTTGTCGAGGAGCAGAAAATCGTAAAGAAGGTTCT
genomic: GTGAACCGCGCGTATGGTGGCACCATGGCAGGGTCTGCAGTGCGTGAGCGgtatgttaca ... cgtgtttcagCATCATTCGAGCATTCCTTGTCGAGGAGCAGAAAATCGTAAAGAAGGTTCT
EST: gi|162241774|gb|FC417301.1|FC417301
EST:     GTGAACCGCGCGTATGGTGGCACCATGGCAGGGTCTGCAGTGCGTGAGCG                         CATCATTCGAGCATTCCTTGTCGAGGAGCAGAAAATCGTAAAGAAGGTTCT
genomic: GTGAACCGCGCGTATGGTGGCACCATGGCAGGGTCTGCAGTGCGTGAGCGgtatgttaca ... cgtgtttcagCATCATTCGAGCATTCCTTGTCGAGGAGCAGAAAATCGTAAAGAAGGTTCT
EST: gi|37844877|gb|BJ602885.1|BJ602885
EST:     GTGAACCGCGCGTATGGTGGCACCATGGCAGGGTCTGCAGTGCGTGAGCG                         CATCATTCGAGCATTCCTTGTCGAGGAGCAGAAAATCGTAAAGAAGGTTCT
genomic: GTGAACCGCGCGTATGGTGGCACCATGGCAGGGTCTGCAGTGCGTGAGCGgtatgttaca ... cgtgtttcagCATCATTCGAGCATTCCTTGTCGAGGAGCAGAAAATCGTAAAGAAGGTTCT
EST: gi|162254004|gb|FC430638.1|FC430638
EST:     GTGAACCGCGCGTATGGTGGCACCATGGCAGGGTCTGCAGTGCGTGAGCG                         CATCATTCGAGCATTCCTTGTCGAGGAGCAGAAAATCGTAAAGAAGGTTCT
genomic: GTGAACCGCGCGTATGGTGGCACCATGGCAGGGTCTGCAGTGCGTGAGCGgtatgttaca ... cgtgtttcagCATCATTCGAGCATTCCTTGTCGAGGAGCAGAAAATCGTAAAGAAGGTTCT
EST: gi|15590644|gb|BI675260.1|BI675260
EST:     GTGAACCGCGCGTATGGTGGCACCATGGCAGGGTCTGCAGTGCGTGAGCG                         CATCATTCGAGCATTCCTTGTCGAGGAGCAGAAAATCGTAATTATTGTTCT
genomic: GTGAACCGCGCGTATGGTGGCACCATGGCAGGGTCTGCAGTGCGTGAGCGgtatgttaca ... cgtgtttcagCATCATTCGAGCATTCCTTGTCGAGGAGCAGAAAATCGTAAAGAAGGTTCT
EST: gi|67572280|gb|BJ945104.1|BJ945104
EST:     GTGAACCGCGCGTATGGTGGCACCATGGCAGGGTCTGCAGTGCGTGAGCG                         CATCATTCGAGCATTCCTTGTCGAGGAGCAGAAAATCGTAAAGAAGGTTCT
genomic: GTGAACCGCGCGTATGGTGGCACCATGGCAGGGTCTGCAGTGCGTGAGCGgtatgttaca ... cgtgtttcagCATCATTCGAGCATTCCTTGTCGAGGAGCAGAAAATCGTAAAGAAGGTTCT
EST: gi|162250297|gb|FC425951.1|FC425951
EST:     GTGAACCGCGCGTATGGTGGCACCATGGCAGGGTCTGCAGTGCGTGAGCG                         CATCATTCGAGCATTCCTTGTCGAGGAGCAGAAAATCGTAAAGAAGGTTCT
genomic: GTGAACCGCGCGTATGGTGGCACCATGGCAGGGTCTGCAGTGCGTGAGCGgtatgttaca ... cgtgtttcagCATCATTCGAGCATTCCTTGTCGAGGAGCAGAAAATCGTAAAGAAGGTTCT
EST: gi|162250298|gb|FC425952.1|FC425952
EST:     GTGAACCGCGCGTATGGTGGCACCATGGCAGGGTCTGCAGTGCGTGAGCG                         CATCATTCGAGCATTCCTTGTCGAGGAGCAGAAAATCGTAAAGAAGGTTCT
genomic: GTGAACCGCGCGTATGGTGGCACCATGGCAGGGTCTGCAGTGCGTGAGCGgtatgttaca ... cgtgtttcagCATCATTCGAGCATTCCTTGTCGAGGAGCAGAAAATCGTAAAGAAGGTTCT
EST: gi|67698108|gb|BJ958341.1|BJ958341
EST:     GTGAACCGCGCGTATGGTGGCACCATGGCAGGGTCTGCAGTGCGTGAGCG                         CATCATTCGAGCATTCCTTGTCGAGGAGCAGAAAATCGTAAAGAAGGTTCT
genomic: GTGAACCGCGCGTATGGTGGCACCATGGCAGGGTCTGCAGTGCGTGAGCGgtatgttaca ... cgtgtttcagCATCATTCGAGCATTCCTTGTCGAGGAGCAGAAAATCGTAAAGAAGGTTCT
EST: gi|37831299|gb|BJ589311.1|BJ589311
EST:     GTGAACCGCGCGTATGGTGGCACCATGGCAGGGTCTGCAGTGCGTGAGCG                         CATCATTCGAGCATTCCTTGTCGAGGAGCAGAAAATCGTAAAGAAGGTTCT
genomic: GTGAACCGCGCGTATGGTGGCACCATGGCAGGGTCTGCAGTGCGTGAGCGgtatgttaca ... cgtgtttcagCATCATTCGAGCATTCCTTGTCGAGGAGCAGAAAATCGTAAAGAAGGTTCT
EST: gi|18351969|gb|BJ184021.1|BJ184021
EST:     GTGAACCGCGCGTATGGTGGCACCATGGCAGGGTCTGCAGTGCGTGAGCG                         CATCATTCGAGCATTCCTTGTCGAGGAGCAGAAAATCGTAAAGAAGGTTCT
genomic: GTGAACCGCGCGTATGGTGGCACCATGGCAGGGTCTGCAGTGCGTGAGCGgtatgttaca ... cgtgtttcagCATCATTCGAGCATTCCTTGTCGAGGAGCAGAAAATCGTAAAGAAGGTTCT
EST: gi|7047040|gb|AW476934.1|AW476934
EST:     GTGAACCGCGCGTATGGTGGCACCATGGCAGGGTCTGCAGTGCGTGAGCG                         CATCATTCGAGCATTCCTTGTCGAGGAGCAGAAAATCGTAAAGAAGGTTCT
genomic: GTGAACCGCGCGTATGGTGGCACCATGGCAGGGTCTGCAGTGCGTGAGCGgtatgttaca ... cgtgtttcagCATCATTCGAGCATTCCTTGTCGAGGAGCAGAAAATCGTAAAGAAGGTTCT
EST: gi|67699358|gb|BJ959591.1|BJ959591
EST:     GTGAACCGCGCGTATGGTGGCACCATGGCAGGGTCTGCAGTGCGTGAGCG                         CATCATTCGAGCATTCCTTGTCGAGGAGCAGAAAATCGTAAAGAAGGTTCT
genomic: GTGAACCGCGCGTATGGTGGCACCATGGCAGGGTCTGCAGTGCGTGAGCGgtatgttaca ... cgtgtttcagCATCATTCGAGCATTCCTTGTCGAGGAGCAGAAAATCGTAAAGAAGGTTCT
EST: gi|15730030|gb|BI741625.1|BI741625
EST:     GTGAACCGCGCGTATGGTGGCACCATGGCAGGGTCTGCAGTGCGTGAGCG                         CATCATTCGAGCATTCCTTGTCGAGGAGCAGAAAATCGTAAAGAAGGTTCT
genomic: GTGAACCGCGCGTATGGTGGCACCATGGCAGGGTCTGCAGTGCGTGAGCGgtatgttaca ... cgtgtttcagCATCATTCGAGCATTCCTTGTCGAGGAGCAGAAAATCGTAAAGAAGGTTCT
EST: gi|162218513|gb|FC395090.1|FC395090
EST:     GTGAACCGCGCGTATGGTGGCACCATGGCAGGGTCTGCAGTGCGTGAGCG                         CATCATTCGAGCATTCCTTGTCGAGGAGCAGAAAATCGTAAAGAAGGTTCT
genomic: GTGAACCGCGCGTATGGTGGCACCATGGCAGGGTCTGCAGTGCGTGAGCGgtatgttaca ... cgtgtttcagCATCATTCGAGCATTCCTTGTCGAGGAGCAGAAAATCGTAAAGAAGGTTCT
EST: gi|67721677|gb|BJ971936.1|BJ971936
EST:     GTGAACCGCGCGTATGGTGGCACCATGGCAGGGTCTGCAGTGCGTGAGCG                         CATCATTCGAGCATTCCTTGTCGAGGAGCAGAAAATCGTAAAGAAGGTTCT
genomic: GTGAACCGCGCGTATGGTGGCACCATGGCAGGGTCTGCAGTGCGTGAGCGgtatgttaca ... cgtgtttcagCATCATTCGAGCATTCCTTGTCGAGGAGCAGAAAATCGTAAAGAAGGTTCT
EST: gi|162230026|gb|FC405966.1|FC405966
EST:     GTGAACCGCGCGTATGGTGGCACCATGGCAGGGTCTGCAGTGCGTGAGCG                         CATCATTCGAGCATTCCTTGTCGAGGAGCAGAAAATCGTAAAGAAGGTTCT
genomic: GTGAACCGCGCGTATGGTGGCACCATGGCAGGGTCTGCAGTGCGTGAGCGgtatgttaca ... cgtgtttcagCATCATTCGAGCATTCCTTGTCGAGGAGCAGAAAATCGTAAAGAAGGTTCT
EST: gi|162229887|gb|FC404340.1|FC404340
EST:     GTGAACCGCGCGTATGGTGGCACCATGGCAGGGTCTGCAGTGCGTGAGCG                         CATCATTCGAGCATTCCTTGTCGAGGAGCAGAAAATCGTAAAGAAGGTTCT
genomic: GTGAACCGCGCGTATGGTGGCACCATGGCAGGGTCTGCAGTGCGTGAGCGgtatgttaca ... cgtgtttcagCATCATTCGAGCATTCCTTGTCGAGGAGCAGAAAATCGTAAAGAAGGTTCT
EST: gi|162272151|gb|FC447945.1|FC447945
EST:     GTGAACCGCGCGTATGGTGGCACCATGGCAGGGTCTGCAGTGCGTGAGCG                         CATCATTCGAGCATTCCTTGTCGAGGAGCAGAAAATCGTAAAGAAGGTTCT
genomic: GTGAACCGCGCGTATGGTGGCACCATGGCAGGGTCTGCAGTGCGTGAGCGgtatgttaca ... cgtgtttcagCATCATTCGAGCATTCCTTGTCGAGGAGCAGAAAATCGTAAAGAAGGTTCT
EST: gi|162272150|gb|FC447944.1|FC447944
EST:     GTGAACCGCGCGTATGGTGGCACCATGGCAGGGTCTGCAGTGCGTGAGCG                         CATCATTCGAGCATTCCTTGTCGAGGAGCAGAAAATCGTAAAGAAGGTTCT
genomic: GTGAACCGCGCGTATGGTGGCACCATGGCAGGGTCTGCAGTGCGTGAGCGgtatgttaca ... cgtgtttcagCATCATTCGAGCATTCCTTGTCGAGGAGCAGAAAATCGTAAAGAAGGTTCT
EST: gi|162199717|gb|FC375956.1|FC375956
EST:     GTGAACCGCGCGTATGGTGGCACCATGGCAGGGTCTGCAGTGCGTGAGCG                         CATCATTCGAGCATTCCTTGTCGAGGAGCAGAAAATCGTAAAGAAGGTTCT
genomic: GTGAACCGCGCGTATGGTGGCACCATGGCAGGGTCTGCAGTGCGTGAGCGgtatgttaca ... cgtgtttcagCATCATTCGAGCATTCCTTGTCGAGGAGCAGAAAATCGTAAAGAAGGTTCT
EST: gi|162206524|gb|FC382893.1|FC382893
EST:     GTGAACCGCGCGTATGGTGGCACCATGGCAGGGTCTGCAGTGCGTGAGCG                         CATCATTCGAGCATTCCTTGTCGAGGAGCAGAAAATCGTAAAGAAGGTTCT
genomic: GTGAACCGCGCGTATGGTGGCACCATGGCAGGGTCTGCAGTGCGTGAGCGgtatgttaca ... cgtgtttcagCATCATTCGAGCATTCCTTGTCGAGGAGCAGAAAATCGTAAAGAAGGTTCT
EST: gi|67695648|gb|BJ955881.1|BJ955881
EST:     GTGAACCGCGCGTATGGTGGCACCATGGCAGGGTCTGCAGTGCGTGAGCG                         CATCATTCGAGCATTCCTTGTCGAGGAGCAGAAAATCGTAAAGAAGGTTCT
genomic: GTGAACCGCGCGTATGGTGGCACCATGGCAGGGTCTGCAGTGCGTGAGCGgtatgttaca ... cgtgtttcagCATCATTCGAGCATTCCTTGTCGAGGAGCAGAAAATCGTAAAGAAGGTTCT
EST: gi|18360386|gb|BJ192448.1|BJ192448
EST:     GTGAACCGCGCGTATGGTGGCACCATGGCAGGGTCTGCAGTGCGTGAGCG                         CATCATTCGAGCATTCCTTGTCGAGGAGCAGAAAATCGTAAAGAAGGTTCT
genomic: GTGAACCGCGCGTATGGTGGCACCATGGCAGGGTCTGCAGTGCGTGAGCGgtatgttaca ... cgtgtttcagCATCATTCGAGCATTCCTTGTCGAGGAGCAGAAAATCGTAAAGAAGGTTCT
EST: gi|18325041|gb|BJ157037.1|BJ157037
EST:     GTGAACCGCGCGTATGGTGGCACCATGGCAGGGTCTGCAGTGCGTGAGCG                         CATCATTCGAGCATTCCTTGTCGAGGAGCAGAAAATCGTAAAGAAGGTTCT
genomic: GTGAACCGCGCGTATGGTGGCACCATGGCAGGGTCTGCAGTGCGTGAGCGgtatgttaca ... cgtgtttcagCATCATTCGAGCATTCCTTGTCGAGGAGCAGAAAATCGTAAAGAAGGTTCT
EST: gi|37838526|gb|BJ596534.1|BJ596534
EST:     GTGAACCGCGCGTATGGTGGCACCATGGCAGGGTCTGCAGTGCGTGAGCG                         CATCATTCGAGCATTCCTTGTCGAGGAGCAGAAAATCGTAAAGAAGGTTCT
genomic: GTGAACCGCGCGTATGGTGGCACCATGGCAGGGTCTGCAGTGCGTGAGCGgtatgttaca ... cgtgtttcagCATCATTCGAGCATTCCTTGTCGAGGAGCAGAAAATCGTAAAGAAGGTTCT
EST: gi|67574690|gb|BJ947514.1|BJ947514
EST:     GTGAACCGCGCGTATGGTGGCACCATGGCAGGGTCTGCAGTGCGTGAGCG                         CATCATTCGAGCATTCCTTGTCGAGGAGCAGAAAATCGTAAAGAAGGTTCT
genomic: GTGAACCGCGCGTATGGTGGCACCATGGCAGGGTCTGCAGTGCGTGAGCGgtatgttaca ... cgtgtttcagCATCATTCGAGCATTCCTTGTCGAGGAGCAGAAAATCGTAAAGAAGGTTCT
EST: gi|162262257|gb|FC437168.1|FC437168
EST:     GTGAACCGCGCGTATGGTGGCACCATGGCAGGGTCTGCAGTGCGTGAGCG                         CATCATTCGAGCATTCCTTGTCGAGGAGCAGAAAATCGTAAAGAAGGTTCT
genomic: GTGAACCGCGCGTATGGTGGCACCATGGCAGGGTCTGCAGTGCGTGAGCGgtatgttaca ... cgtgtttcagCATCATTCGAGCATTCCTTGTCGAGGAGCAGAAAATCGTAAAGAAGGTTCT
EST: gi|18360864|gb|BJ192927.1|BJ192927
EST:     GTGAACCGCGCGTATGGTGGCACCATGGCAGGGTCTGCAGTGCGTGAGCG                         CATCATTCGAGCATTCCTTGTCGAGGAGCAGAAAATCGTAAAGAAGGTTCT
genomic: GTGAACCGCGCGTATGGTGGCACCATGGCAGGGTCTGCAGTGCGTGAGCGgtatgttaca ... cgtgtttcagCATCATTCGAGCATTCCTTGTCGAGGAGCAGAAAATCGTAAAGAAGGTTCT
EST: gi|162206500|gb|FC382869.1|FC382869
EST:     GTGAACCGCGCGTATGGTGGCACCATGGCAGGGTCTGCAGTGCGTGAGCG                         CATCATTCGAGCATTCCTTGTCGAGGAGCAGAAAATCGTAAAGAAGGTTCT
genomic: GTGAACCGCGCGTATGGTGGCACCATGGCAGGGTCTGCAGTGCGTGAGCGgtatgttaca ... cgtgtttcagCATCATTCGAGCATTCCTTGTCGAGGAGCAGAAAATCGTAAAGAAGGTTCT
EST: gi|162206116|gb|FC383109.1|FC383109
EST:     GTGAACCGCGCGTATGGTGGCACCATGGCAGGGTCTGCAGTGCGTGAGCG                         CATCATTCGAGCATTCCTTGTCGAGGAGCAGAAAATCGTAAAGAAGGTTCT
genomic: GTGAACCGCGCGTATGGTGGCACCATGGCAGGGTCTGCAGTGCGTGAGCGgtatgttaca ... cgtgtttcagCATCATTCGAGCATTCCTTGTCGAGGAGCAGAAAATCGTAAAGAAGGTTCT
EST: gi|67575874|gb|BJ948698.1|BJ948698
EST:     GTGAACCGCGCGTATGGTGGCACCATGGCAGGGTCTGCAGTGCGTGAGCG                         CATCATTCGAGCATTCCTTGTCGAGGAGCAGAAAATCGTAAAGAAGGTTCT
genomic: GTGAACCGCGCGTATGGTGGCACCATGGCAGGGTCTGCAGTGCGTGAGCGgtatgttaca ... cgtgtttcagCATCATTCGAGCATTCCTTGTCGAGGAGCAGAAAATCGTAAAGAAGGTTCT
EST: gi|162220744|gb|FC395513.1|FC395513
EST:     GTGAACCGCGCGTATGGTGGCACCATGGCAGGGTCTGCAGTGCGTGAGCG                         CATCATTCGAGCATTCCTTGTCGAGGAGCAGAAAATCGTAAAGAAGGTTCT
genomic: GTGAACCGCGCGTATGGTGGCACCATGGCAGGGTCTGCAGTGCGTGAGCGgtatgttaca ... cgtgtttcagCATCATTCGAGCATTCCTTGTCGAGGAGCAGAAAATCGTAAAGAAGGTTCT
EST: gi|162241775|gb|FC417302.1|FC417302
EST:     GTGAACCGCGCGTATGGTGGCACCATGGCAGGGTCTGCAGTGCGTGAGCG                         CATCATTCGAGCATTCCTTGTCGAGGAGCAGAAAATCGTAAAGAAGGTTCT
genomic: GTGAACCGCGCGTATGGTGGCACCATGGCAGGGTCTGCAGTGCGTGAGCGgtatgttaca ... cgtgtttcagCATCATTCGAGCATTCCTTGTCGAGGAGCAGAAAATCGTAAAGAAGGTTCT
EST: gi|67701327|gb|BJ961560.1|BJ961560
EST:     GTGAACCGCGCGTATGGTGGCACCATGGCAGGGTCTGCAGTGCGTGAGCG                         CATCATTCGAGCATTCCTTGTCGAGGAGCAGAAAATCGTAAAGAAGGTTCT
genomic: GTGAACCGCGCGTATGGTGGCACCATGGCAGGGTCTGCAGTGCGTGAGCGgtatgttaca ... cgtgtttcagCATCATTCGAGCATTCCTTGTCGAGGAGCAGAAAATCGTAAAGAAGGTTCT
EST: gi|15320128|gb|BI487719.1|BI487719
EST:     GTGAACCGCGCGTATGGTGGCACCATGGCAGGGTCTGCAGTGCGTGAGCG                         CATCATTCGAGCATTCCTTGTCGAGGAGCAGAAAATCGTAAAGAAGGTTCT
genomic: GTGAACCGCGCGTATGGTGGCACCATGGCAGGGTCTGCAGTGCGTGAGCGgtatgttaca ... cgtgtttcagCATCATTCGAGCATTCCTTGTCGAGGAGCAGAAAATCGTAAAGAAGGTTCT
EST: gi|37849823|gb|BJ607831.1|BJ607831
EST:     GTGAACCGCGCGTATGGTGGCACCATGGCAGGGTCTGCAGTGCGTGAGCG                         CATCATTCGAGCATTCCTTGTCGAGGAGCAGAAAATCGTAAAGAAGGTTCT
genomic: GTGAACCGCGCGTATGGTGGCACCATGGCAGGGTCTGCAGTGCGTGAGCGgtatgttaca ... cgtgtttcagCATCATTCGAGCATTCCTTGTCGAGGAGCAGAAAATCGTAAAGAAGGTTCT
EST: gi|162241864|gb|FC418119.1|FC418119
EST:     GTGAACCGCGCGTATGGTGGCACCATGGCAGGGTCTGCAGTGCGTGAGCG                         CATCATTCGAGCATTCCTTGTCGAGGAGCAGAAAATCGTAAAGAAGGTTCT
genomic: GTGAACCGCGCGTATGGTGGCACCATGGCAGGGTCTGCAGTGCGTGAGCGgtatgttaca ... cgtgtttcagCATCATTCGAGCATTCCTTGTCGAGGAGCAGAAAATCGTAAAGAAGGTTCT
EST: gi|162240244|gb|FC415966.1|FC415966
EST:     GTGAACCGCGCGTATGGTGGCACCATGGCAGGGTCTGCAGTGCGTGAGCG                         CATCATTCGAGCATTCCTTGTCGAGGAGCAGAAAATCGTAAAGAAGGTTCT
genomic: GTGAACCGCGCGTATGGTGGCACCATGGCAGGGTCTGCAGTGCGTGAGCGgtatgttaca ... cgtgtttcagCATCATTCGAGCATTCCTTGTCGAGGAGCAGAAAATCGTAAAGAAGGTTCT
EST: gi|162151568|gb|FC327281.1|FC327281
EST:     GTGAACCGCGCGTATGGTGGCACCATGGCAGGGTCTGCAGTGCGTGAGCG                         CATCATTCGAGCATTCCTTGTCGAGGAGCAGAAAATCGTAAAGAAGGTTCT
genomic: GTGAACCGCGCGTATGGTGGCACCATGGCAGGGTCTGCAGTGCGTGAGCGgtatgttaca ... cgtgtttcagCATCATTCGAGCATTCCTTGTCGAGGAGCAGAAAATCGTAAAGAAGGTTCT
EST: gi|18374313|gb|BJ205891.1|BJ205891
EST:     GTGAACCGCGCGTATGGTGGCACCATGGCAGGGTCTGCAGTGCGTGAGCG                         CATCATTCGAGCATTCCTTGTCGAGGAGCAGAAAATCGTAAAGAAGGTTCT
genomic: GTGAACCGCGCGTATGGTGGCACCATGGCAGGGTCTGCAGTGCGTGAGCGgtatgttaca ... cgtgtttcagCATCATTCGAGCATTCCTTGTCGAGGAGCAGAAAATCGTAAAGAAGGTTCT
EST: gi|37838753|gb|BJ596761.1|BJ596761
EST:     GTGAACCGCGCGTATGGTGGCACCATGGCAGGGTCTGCAGTGCGTGAGCG                         CATCATTCGAGCATTCCTTGTCGAGGAGCAGAAAATCGTAAAGAAGGTTCT
genomic: GTGAACCGCGCGTATGGTGGCACCATGGCAGGGTCTGCAGTGCGTGAGCGgtatgttaca ... cgtgtttcagCATCATTCGAGCATTCCTTGTCGAGGAGCAGAAAATCGTAAAGAAGGTTCT
EST: gi|162265356|gb|FC440474.1|FC440474
EST:     GTGAACCGCGCGTATGGTGGCACCATGGCAGGGTCTGCAGTGCGTGAGCG                         CATCATTCGAGCATTCCTTGTCGAGGAGCAGAAAATCGTAAAGAAGGTTCT
genomic: GTGAACCGCGCGTATGGTGGCACCATGGCAGGGTCTGCAGTGCGTGAGCGgtatgttaca ... cgtgtttcagCATCATTCGAGCATTCCTTGTCGAGGAGCAGAAAATCGTAAAGAAGGTTCT
EST: gi|22492578|gb|BU052501.1|BU052501
EST:     GTGAACCGCGCGTATGGTGGCACCATGGCAGGGTCTGCAGTGCGTGAGCG                         CATCATTCGAGCATTCCTTGTCGAGGAGCAGAAAATCGTAAAGAAGGTTCT
genomic: GTGAACCGCGCGTATGGTGGCACCATGGCAGGGTCTGCAGTGCGTGAGCGgtatgttaca ... cgtgtttcagCATCATTCGAGCATTCCTTGTCGAGGAGCAGAAAATCGTAAAGAAGGTTCT
EST: gi|22132566|gb|BQ827229.1|BQ827229
EST:     GTGAACCGCGCGTATGGTGGCACCATGGCAGGGTCTGCAGTGCGTGAGCG                         CATCATTCGAGCATTCCTTGTCGAGGAGCAGAAAATCGTAAAGAAGGTTCT
genomic: GTGAACCGCGCGTATGGTGGCACCATGGCAGGGTCTGCAGTGCGTGAGCGgtatgttaca ... cgtgtttcagCATCATTCGAGCATTCCTTGTCGAGGAGCAGAAAATCGTAAAGAAGGTTCT
EST: gi|67703168|gb|BJ963401.1|BJ963401
EST:     GTGAACCGCGCGTATGGTGGCACCATGGCAGGGTCTGCAGTGCGTGAGCG                         CATCATTCGAGCATTCCTTGTCGAG
genomic: GTGAACCGCGCGTATGGTGGCACCATGGCAGGGTCTGCAGTGCGTGAGCGgtatgttaca ... cgtgtttcagCATCATTCGAGCATTCCTTGTCGAG
EST: gi|162269168|gb|FC445036.1|FC445036
EST:     GTGAACCGCGCGTATGGTGGCACCATGGCAGGGTCTGCAGTGCGTGAGCG                         CATCATTCGAGCATTCCTTGTCGAGGAGCAGAAAATCGTAAAGAAGGTTCT
genomic: GTGAACCGCGCGTATGGTGGCACCATGGCAGGGTCTGCAGTGCGTGAGCGgtatgttaca ... cgtgtttcagCATCATTCGAGCATTCCTTGTCGAGGAGCAGAAAATCGTAAAGAAGGTTCT
EST: gi|162215229|gb|FC391634.1|FC391634
EST:     GTGAACCGCGCGTATGGTGGCACCATGGCAGGGTCTGCAGTGCGTGAGCG                         CATCATTCGAGCATTCCTTGTCGAGGAGCAGAAAATCGTAAAGAAGGTTCT
genomic: GTGAACCGCGCGTATGGTGGCACCATGGCAGGGTCTGCAGTGCGTGAGCGgtatgttaca ... cgtgtttcagCATCATTCGAGCATTCCTTGTCGAGGAGCAGAAAATCGTAAAGAAGGTTCT
EST: gi|7583043|gb|AW699207.1|AW699207
EST:     GTGAACCGCGCGTATGGTGGCACCATGGCAGGGTCTGCAGTGCGTGAGCG                         CATCATTCGAGCATTCCTTGTCGAGGAGCAGAAAATCGTAAAGAAGGTTCT
genomic: GTGAACCGCGCGTATGGTGGCACCATGGCAGGGTCTGCAGTGCGTGAGCGgtatgttaca ... cgtgtttcagCATCATTCGAGCATTCCTTGTCGAGGAGCAGAAAATCGTAAAGAAGGTTCT
EST: gi|67578429|gb|BJ950596.1|BJ950596
EST:     GTGAACCGCGCGTATGGTGGCACCATGGCAGGGTCTGCAGTGCGTGAGCG                         CATCATTCGAGCATTCCTTGTCGAGGAGCAGAAAATCGTAAAGAAGGTTCT
genomic: GTGAACCGCGCGTATGGTGGCACCATGGCAGGGTCTGCAGTGCGTGAGCGgtatgttaca ... cgtgtttcagCATCATTCGAGCATTCCTTGTCGAGGAGCAGAAAATCGTAAAGAAGGTTCT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 33 (upstream exon), 35 (downstream exon)
Score: 41

TGAGACCCACGGAGTATAAGACTTCTCGTCTTCACCGGCACAAGAAAACTGTGAACCGCGCGTATGGTGGCACCATGGCAGGGTCTGCAGTGCGTGAGCGgtatgttaca ... cgtgtttcagCATCATTCGAGCATTCCTTGTCGAGGAGCAGAAAATCGTAAAGAAGGTTCTGAAGATTCAGAAGTCCAAGGAGAAATTGGCTGCCAAGGCTCAATCTTAA




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGAGACCCACGGAGTATAAGACTTCTCGTCTTCACCGGCACAAGAAAACTGTGAACCGCGCGTATGGTGGCACCATGGCAGGGTCTGCAGTGCGTGAGCGgtatgttacatcccaggggatttccttttggtcaatttagcgcagtggtgatctgacccatgacttccgattatccggagtgtccttggtcaaatgacta

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG