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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGAAGCTGCAGATCAAAGTCGATGAAAAGACCGGGGAAATTATAGATGCCTGTTTCAAGACCTTCGGATGTGGTTCGGCTATTGCTTCGTCGTCTGTTGgtatgttggctacaccattcaaccatacgatagggtattctgcctaggtcggaaggatctgaatctgtccttggaaatgaaagcttatcactggatattc...

Basic information

species Physcomitrella patens
transcript PP1S76_212V6.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18325020|gb|BJ157016.1|BJ157016
EST:     CTGTTTCAAGACCTTCGGATGTGGTTCGGCTATTGCTTCGTCGTCTGTTG                         CTTCTGAGTGGATCAAGGGGAAGGCTATGGAAGAAGCAGTGAGCATTAAGA
genomic: CTGTTTCAAGACCTTCGGATGTGGTTCGGCTATTGCTTCGTCGTCTGTTGgtatgttggc ... gtgctcgtagCTTCTGAGTGGATCAAGGGGAAGGCTATGGAAGAAGCAGTGAGCATTAAGA
EST: gi|162224580|gb|FC400476.1|FC400476
EST:     TTCAAGACCTTCGGATGTGGTTCGGCTATTGCTTCGTCGTCTGTTG                         CTTCTGAGTGGATCAAGGGGAAGGCTATGGAAGAAGCAGTGAGCATTAAGA
genomic: TTCAAGACCTTCGGATGTGGTTCGGCTATTGCTTCGTCGTCTGTTGgtatgttggc ... gtgctcgtagCTTCTGAGTGGATCAAGGGGAAGGCTATGGAAGAAGCAGTGAGCATTAAGA
EST: gi|18348082|gb|BJ180129.1|BJ180129
EST:     CTGTTTCAAGACCTTCGGATGTGGTTCGGCTATTGCTTCGTCGTCTGTTG                         CTTCTGAGTGGATCAAGGGGAAGGCTATGGAAGAAGCAGTGAGCATTAAGA
genomic: CTGTTTCAAGACCTTCGGATGTGGTTCGGCTATTGCTTCGTCGTCTGTTGgtatgttggc ... gtgctcgtagCTTCTGAGTGGATCAAGGGGAAGGCTATGGAAGAAGCAGTGAGCATTAAGA
EST: gi|67508569|gb|BJ941432.1|BJ941432
EST:     CTGTTTCAAGACCTTCGGATGTGGTTCGGCTATTGCTTCGTCGTCTGTTG                         CTTCTGAGTGGATCAAGGGGAAGGCTATGGAAGAAGCAGTGAGCATTAAGA
genomic: CTGTTTCAAGACCTTCGGATGTGGTTCGGCTATTGCTTCGTCGTCTGTTGgtatgttggc ... gtgctcgtagCTTCTGAGTGGATCAAGGGGAAGGCTATGGAAGAAGCAGTGAGCATTAAGA
EST: gi|18345107|gb|BJ177148.1|BJ177148
EST:     TGTTTCAAGACCTTTCGGATGTGGTTCGGCTATTGCTTCGTCGTCTGTTG                         CTTCTGAGTGGATCAAGGGGAAGGCTATGGAAGAAGCAGTGAGCATTAAGA
genomic: TGTTTCAAGACCTT-CGGATGTGGTTCGGCTATTGCTTCGTCGTCTGTTGgtatgttggc ... gtgctcgtagCTTCTGAGTGGATCAAGGGGAAGGCTATGGAAGAAGCAGTGAGCATTAAGA
EST: gi|37827453|gb|BJ585465.1|BJ585465
EST:     CTGTTTCAAGACCTTCGGATGTGGTTCGGCTATTGCTTCGTCGTCTGTTG                         CTTCTGAGTGGATCAAGGGGAAGGCTATGGAAGAAGCAGTGAGCATTAAGA
genomic: CTGTTTCAAGACCTTCGGATGTGGTTCGGCTATTGCTTCGTCGTCTGTTGgtatgttggc ... gtgctcgtagCTTCTGAGTGGATCAAGGGGAAGGCTATGGAAGAAGCAGTGAGCATTAAGA
EST: gi|162250386|gb|FC426248.1|FC426248
EST:     CTGTTTCAAGACCTTCGGATGTGGTTCGGCTATTGCTTCGTCGTCTGTTG                         CTTCTGAGTGGATCAAGGGGAAGGCTATGGAAGAAGCAGTGAGCATTAAGA
genomic: CTGTTTCAAGACCTTCGGATGTGGTTCGGCTATTGCTTCGTCGTCTGTTGgtatgttggc ... gtgctcgtagCTTCTGAGTGGATCAAGGGGAAGGCTATGGAAGAAGCAGTGAGCATTAAGA
EST: gi|37824297|gb|BJ582363.1|BJ582363
EST:     CTGTTTCAAGACCTTCGGATGTGGTTCGGCTATTGCTTCGTCGTCTGTTG                         CTTCTGAGTGGATCAAGGGGAAGGCTATGGAAGAAGCAGTGAGCATTAAGA
genomic: CTGTTTCAAGACCTTCGGATGTGGTTCGGCTATTGCTTCGTCGTCTGTTGgtatgttggc ... gtgctcgtagCTTCTGAGTGGATCAAGGGGAAGGCTATGGAAGAAGCAGTGAGCATTAAGA
EST: gi|162250385|gb|FC426247.1|FC426247
EST:     CTGTTTCAAGACCTTCGGATGTGGTTCGGCTATTGCTTCGTCGTCTGTTG                         CTTCTGAGTGGATCAAGGGGAAGGCTATGGAAGAAGCAGTGAGCATTAAGA
genomic: CTGTTTCAAGACCTTCGGATGTGGTTCGGCTATTGCTTCGTCGTCTGTTGgtatgttggc ... gtgctcgtagCTTCTGAGTGGATCAAGGGGAAGGCTATGGAAGAAGCAGTGAGCATTAAGA
EST: gi|162177237|gb|FC353394.1|FC353394
EST:     CTGTTTCAAGACCTTCGGATGTGGTTCGGCTATTGCTTCGTCGTCTGTTG                         CTTCTGAGTGGATCAAGGGGAAGGCTATGGAAGAAGCAGTGAGCATTAAGA
genomic: CTGTTTCAAGACCTTCGGATGTGGTTCGGCTATTGCTTCGTCGTCTGTTGgtatgttggc ... gtgctcgtagCTTCTGAGTGGATCAAGGGGAAGGCTATGGAAGAAGCAGTGAGCATTAAGA
EST: gi|67691788|gb|BJ952021.1|BJ952021
EST:     TCGGATGTGGTTCGGCTATTGCTTCGTCGTCTGTTG                         CTTCTGAGTGGATCAAGGGGAAGGCTATGGAAGAAGCAGTGAGCATTAAGA
genomic: TCGGATGTGGTTCGGCTATTGCTTCGTCGTCTGTTGgtatgttggc ... gtgctcgtagCTTCTGAGTGGATCAAGGGGAAGGCTATGGAAGAAGCAGTGAGCATTAAGA
EST: gi|162224579|gb|FC400475.1|FC400475
EST:     TTCAAGACCTTCGGATGTGGTTCGGCTATTGCTTCGTCGTCTGTTG                         CTTCTGAGTGGATCAAGGGGAAGGCTATGGAAGAAGCAGTGAGCATTAAGA
genomic: TTCAAGACCTTCGGATGTGGTTCGGCTATTGCTTCGTCGTCTGTTGgtatgttggc ... gtgctcgtagCTTCTGAGTGGATCAAGGGGAAGGCTATGGAAGAAGCAGTGAGCATTAAGA
EST: gi|162177238|gb|FC353395.1|FC353395
EST:     CTGTTTCAAGACCTTCGGATGTGGTTCGGCTATTGCTTCGTCGTCTGTTG                         CTTCTGAGTGGATCAAGGGGAAGGCTATGGAAGAAGCAGTGAGCATTAAGA
genomic: CTGTTTCAAGACCTTCGGATGTGGTTCGGCTATTGCTTCGTCGTCTGTTGgtatgttggc ... gtgctcgtagCTTCTGAGTGGATCAAGGGGAAGGCTATGGAAGAAGCAGTGAGCATTAAGA