1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GTCGAAGGAGATCAAGGATGCAGCGAAGATGTGCATAGAAGAGTGTGTAACTGAGCTCGTGGCTCTCCAAGTTCAACTGGCAAAGAAGGAGAAAGAGAAGgtttcgattaatactctgaaaaagtttgcaatgtggtcttttatttttattttttgcagcagggtggtgctcaagaacaagtttagaaatgcactgtgcatcaaacgttcataaaaataacttgaagcaatatcttttggttctgcag
species | Physcomitrella patens |
transcript | PP1S76_186V6.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CTGAGCTCGTGGCTCTCCAAGTTCAACTGGCAAAGAAGGAGAAAGAGAAG CAACAAGCCGTAAACTGTTTCGCAAAGGTGGAGACTGCCATAATGAAGTTCEST: gi|208358946|gb|DC946375.1|DC946375
genomic: CTGAGCTCGTGGCTCTCCAAGTTCAACTGGCAAAGAAGGAGAAAGAGAAGgtttcgatta ... ggttctgcagCAACAAGCCGTAAACTGTTTCGCAAAGGTGGAGACTGCCATAATGAAGTTC
EST: CTGAGCTCGTGGCTCTCCAAGTTCAACTGGCAAAGAAGGAGAAAGAGAAG CAACAAGCCGTAAACTGTTTCGCAAAGGTGGAGACTGCCATAATGAAGTTCEST: gi|162272533|gb|FC448523.1|FC448523
genomic: CTGAGCTCGTGGCTCTCCAAGTTCAACTGGCAAAGAAGGAGAAAGAGAAGgtttcgatta ... ggttctgcagCAACAAGCCGTAAACTGTTTCGCAAAGGTGGAGACTGCCATAATGAAGTTC
EST: CTGAGCTCGTGGCTCTCCAAGTTCAACTGGCAAAGAAGGAGAAAGAGAAG CAACAAGCCGTAAACTGTTTCGCAAAGGTGGAGACTGCCATAATGAAGTTC
genomic: CTGAGCTCGTGGCTCTCCAAGTTCAACTGGCAAAGAAGGAGAAAGAGAAGgtttcgatta ... ggttctgcagCAACAAGCCGTAAACTGTTTCGCAAAGGTGGAGACTGCCATAATGAAGTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCGAAGGAGATCAAGGATGCAGCGAAGATGTGCATAGAAGAGTGTGTAACTGAGCTCGTGGCTCTCCAAGTTCAACTGGCAAAGAAGGAGAAAGAGAAGgtttcgattaatactctgaaaaagtttgcaatgtggtcttttatttttattttttgcagcagggtggtgctcaagaacaagtttagaaatgcactgtgcatcaaacgttcataaaaataacttgaagcaatatcttttggttctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA