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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCAAAAGAGGAGCTGCCGCCCTTGAGCGCCTGAAGGCCTTTGAAGGAGTACCTGCACCTTACGATAAAATGAAGAGGATGGTCATTCCAGATGCGCTCAAgtgagttttaattgaaatctacgtctccattttggatattgttggttgtacatctacttgcactaagttacgtccgacggtagcgcaaatgtcatcacac...

Basic information

species Physcomitrella patens
transcript PP1S75_223V6.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S75_223V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: Vv07s0005g06490.t01 (Vitis vinifera), 5'ss of exon 2
CCAAAAGAGGAGCTGCCGCCCTTGAGCGCCTGAAGGCCTTTGAAGGAGTACCTGCACCTTACGATAAAATGAAGAGGATGGTCATTCCAGATGCGCTCAAgtgagttt--taattgaaatctacgtctccattttggatattgttggttgtacatctacttgcactaagttacgtc--cgacggta-gcgcaaatgtcatcacac------------------------------------
||||  | ||||| || |||||||  ||  ||||||| | ||| ||| | ||| |||| || ||||| |||||||||||||||||||| ||||| ||||||| |||||  |  ||    |     ||    | |  ||  || ||  |||    |    ||  | |   ||   |     |   |  |    ||| |  |  |                                      
CCAAGCGTGGAGCAGCAGCCCTTGCACGATTGAAGGCTTATGAGGGAATCCCTCCACCATATGATAAGATGAAGAGGATGGTCATTCCTGATGCACTCAAgttagtttcttgtttctcttgattatcgttgtctctgaatttcttaattggggtttggtttcaagtctattgtttttttaatcatgtgttttaatcttgtttcttgctaattgatttgatggttggttgaaataaaattag

upper sequence: PP1S75_223V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: Vv05s0029g00020.t01 (Vitis vinifera), 5'ss of exon 2
CCAAAAGAGGAGCTGCCGCCCTTGAGCGCCTGAAGGCCTTTGAAGGAGTACCTGCACCTTACGATAAAATGAAGAGGATGGTCATTCCAGATGCGCTCAAgtgagtttta-attgaaatctacgtctccattttggatattgttggttgtacatctacttgcactaagttacgtccgacggtagcgca-aatgtcatcacac-------
| ||  | ||||| || || ||||   |  ||||||| |  || ||  | ||  | || || ||||| |||||||||||||| ||||| || || |||||||||||| |  |||  | | |   | |  |||||   |||| ||  || ||   |||      ||   |    |  |||  ||  ||   |  |  |            
CTAAGCGTGGAGCCGCAGCGCTTGCCAGATTGAAGGCTTACGAGGGGATTCCACCTCCATATGATAAGATGAAGAGGATGGTTATTCCTGACGCTCTCAAgtgagttctgtatttgagttttattttttattttt--tattttttatt-taggcctataaattcttgttggtttgagactttaatgcttgagatttttgggaaaatcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18325923|gb|BJ157922.1|BJ157922
EST:     CCTGCACCTTACGATAAAATGAAGAGGATGGTCATTCCAGATGCGCTCAA                         AGTATTGAGGCTGAAACCTGGACACAAATTTTGTTTGTTGGGCCGTTTGTC
genomic: CCTGCACCTTACGATAAAATGAAGAGGATGGTCATTCCAGATGCGCTCAAgtgagtttta ... tcttgtacagAGTATTGAGGCTGAAACCTGGACACAAATTTTGTTTGTTGGGCCGTTTGTC
EST: gi|37840797|gb|BJ598805.1|BJ598805
EST:     CCTGCACCTTACGATAAAATGAAGAGGATGGTCATTCCAGATGCGCTCAA                         AGTATTGAGGCTGAAACCTGGACACAAATTTTGTTTGTTGGGCCGTTTGTC
genomic: CCTGCACCTTACGATAAAATGAAGAGGATGGTCATTCCAGATGCGCTCAAgtgagtttta ... tcttgtacagAGTATTGAGGCTGAAACCTGGACACAAATTTTGTTTGTTGGGCCGTTTGTC
EST: gi|18333764|gb|BJ165780.1|BJ165780
EST:     CTTACGATAAAATGAAGAGGATGGTCATTCCAGATGCGCTCAA                         AGTATTGAGGCTGAAACCTGGACACAAATTTTGTTTGTTGGGCCGTTTGTC
genomic: CTTACGATAAAATGAAGAGGATGGTCATTCCAGATGCGCTCAAgtgagtttta ... tcttgtacagAGTATTGAGGCTGAAACCTGGACACAAATTTTGTTTGTTGGGCCGTTTGTC
EST: gi|67578235|gb|BJ950402.1|BJ950402
EST:     CCTGCACCTTACGATAAAATGAAGAGGATGGTCATTCCAGATGCGCTCAA                         AGTATTGAGGCTGAAACCTGGACACAAATTTTGTTTGTTGGGCCGTTTGTC
genomic: CCTGCACCTTACGATAAAATGAAGAGGATGGTCATTCCAGATGCGCTCAAgtgagtttta ... tcttgtacagAGTATTGAGGCTGAAACCTGGACACAAATTTTGTTTGTTGGGCCGTTTGTC
EST: gi|67572139|gb|BJ944963.1|BJ944963
EST:     CCTGCACCTTACGATAAAATGAAGAGGATGGTCATTCCAGATGCGCTCAA                         AGTATTGAGGCTGAAACCTGGACACAAATTTTGTTTGTTGGGCCGTTTGTC
genomic: CCTGCACCTTACGATAAAATGAAGAGGATGGTCATTCCAGATGCGCTCAAgtgagtttta ... tcttgtacagAGTATTGAGGCTGAAACCTGGACACAAATTTTGTTTGTTGGGCCGTTTGTC
EST: gi|162237534|gb|FC413630.1|FC413630
EST:     CCTGCACCTTACGATAAAATGAAGAGGATGGTCATTCCAGATGCGCTCAA                         AGTATTGAGGCTGAAACCTGGACACAAATTTTGTTTGTTGGGCCGTTTGTC
genomic: CCTGCACCTTACGATAAAATGAAGAGGATGGTCATTCCAGATGCGCTCAAgtgagtttta ... tcttgtacagAGTATTGAGGCTGAAACCTGGACACAAATTTTGTTTGTTGGGCCGTTTGTC
EST: gi|67691747|gb|BJ951980.1|BJ951980
EST:     CCTGCACCTTACGATAAAATGAAGAGGATGGTCATTCCAGATGCGCTCAA                         AGTATTGAGGCTGAAACCTGGACACAAATTTTGTTTGTTGGGCCGTTTGTC
genomic: CCTGCACCTTACGATAAAATGAAGAGGATGGTCATTCCAGATGCGCTCAAgtgagtttta ... tcttgtacagAGTATTGAGGCTGAAACCTGGACACAAATTTTGTTTGTTGGGCCGTTTGTC
EST: gi|162249129|gb|FC420380.1|FC420380
EST:     CCTGCACCTTACGATAAAATGAAGAGGATGGTCATTCCAGATGCGCTCAA                         AGTATTGAGGCTGAAACCTGGACACAAATTTTGTTTGTTGGGCCGTTTGTC
genomic: CCTGCACCTTACGATAAAATGAAGAGGATGGTCATTCCAGATGCGCTCAAgtgagtttta ... tcttgtacagAGTATTGAGGCTGAAACCTGGACACAAATTTTGTTTGTTGGGCCGTTTGTC
EST: gi|162184188|gb|FC359649.1|FC359649
EST:     CCTGCACCTTACGATAAAATGAAGAGGATGGTCATTCCAGATGCGCTCAA                         AGTATTGAGGCTGAAACCTGGACACAAATTTTGTTTGTTGGGCCGTTTGTC
genomic: CCTGCACCTTACGATAAAATGAAGAGGATGGTCATTCCAGATGCGCTCAAgtgagtttta ... tcttgtacagAGTATTGAGGCTGAAACCTGGACACAAATTTTGTTTGTTGGGCCGTTTGTC
EST: gi|67694629|gb|BJ954862.1|BJ954862
EST:     CCTGCACCTTACGATAAAATGAAGAGGATGGTCATTCCAGATGCGCTCAA                         AGTATTGAGGCTGAAACCTGGACACAAATTTTGTTTGTTGGGCCGTTTGTC
genomic: CCTGCACCTTACGATAAAATGAAGAGGATGGTCATTCCAGATGCGCTCAAgtgagtttta ... tcttgtacagAGTATTGAGGCTGAAACCTGGACACAAATTTTGTTTGTTGGGCCGTTTGTC
EST: gi|37821428|gb|BJ579494.1|BJ579494
EST:     CCTGCACCTTACGATAAAATGAAGAGGATGGTCATTCCAGATGCGCTCAA                         AGTATTGAGGCTGAAACCTGGACACAAATTTTGTTTGTTGGGCCGTTTGTC
genomic: CCTGCACCTTACGATAAAATGAAGAGGATGGTCATTCCAGATGCGCTCAAgtgagtttta ... tcttgtacagAGTATTGAGGCTGAAACCTGGACACAAATTTTGTTTGTTGGGCCGTTTGTC
EST: gi|162184189|gb|FC359650.1|FC359650
EST:     CCTGCACCTTACGATAAAATGAAGAGGATGGTCATTCCAGATGCGCTCAA                         AGTATTGAGGCTGAAACCTGGACACAAATTTTGTTTGTTGGGCCGTTTGTC
genomic: CCTGCACCTTACGATAAAATGAAGAGGATGGTCATTCCAGATGCGCTCAAgtgagtttta ... tcttgtacagAGTATTGAGGCTGAAACCTGGACACAAATTTTGTTTGTTGGGCCGTTTGTC
EST: gi|67700129|gb|BJ960362.1|BJ960362
EST:     CCTGCACCTTACGATAAAATGAAGAGGATGGTCATTCCAGATGCGCTCAA                         AGTATTGAGGCTGAAACCTGGACACAAATTTTGTTTGTTGGGCCGTTTGTC
genomic: CCTGCACCTTACGATAAAATGAAGAGGATGGTCATTCCAGATGCGCTCAAgtgagtttta ... tcttgtacagAGTATTGAGGCTGAAACCTGGACACAAATTTTGTTTGTTGGGCCGTTTGTC
EST: gi|67704631|gb|BJ964864.1|BJ964864
EST:     CCTGCACCTTACGATAAAATGAAGAGGATGGTCATTCCAGATGCGCTCAA                         AGTATTGAGGCTGAAACCTGGACACAAATTTTGTTTGTTGGGCCGTTTGTC
genomic: CCTGCACCTTACGATAAAATGAAGAGGATGGTCATTCCAGATGCGCTCAAgtgagtttta ... tcttgtacagAGTATTGAGGCTGAAACCTGGACACAAATTTTGTTTGTTGGGCCGTTTGTC
EST: gi|100355108|gb|BY965008.1|BY965008
EST:     CCTGCACCTTACGATAAAATGAAGAGGATGGTCATTCCAGATGCGCTCAA                         AGTATTGAGGCTGAAACCTGGACACAAATTTTGTTTGTTGGGCCGTTTGTC
genomic: CCTGCACCTTACGATAAAATGAAGAGGATGGTCATTCCAGATGCGCTCAAgtgagtttta ... tcttgtacagAGTATTGAGGCTGAAACCTGGACACAAATTTTGTTTGTTGGGCCGTTTGTC
EST: gi|162262069|gb|FC436850.1|FC436850
EST:     CCTGCACCTTACGATAAAATGAAGAGGATGGTCATTCCAGATGCGCTCAA                         AGTATTGAGGCTGAAACCTGGACACAAATTTTGTTTGTTGGGCCGTTTGTC
genomic: CCTGCACCTTACGATAAAATGAAGAGGATGGTCATTCCAGATGCGCTCAAgtgagtttta ... tcttgtacagAGTATTGAGGCTGAAACCTGGACACAAATTTTGTTTGTTGGGCCGTTTGTC
EST: gi|162267118|gb|FC443349.1|FC443349
EST:     CCTGCACCTTACGATAAAATGAAGAGGATGGTCATTCCAGATGCGCTCAA                         AGTATTGAGGCTGAAACCTGGACACAAATTTTGTTTGTTGGGCCGTTTGTC
genomic: CCTGCACCTTACGATAAAATGAAGAGGATGGTCATTCCAGATGCGCTCAAgtgagtttta ... tcttgtacagAGTATTGAGGCTGAAACCTGGACACAAATTTTGTTTGTTGGGCCGTTTGTC
EST: gi|67571310|gb|BJ944134.1|BJ944134
EST:     CCTGCACCTTACGATAAAATGAAGAGGATGGTCATTCCAGATGCGCTCAA                         AGTATTGAGGCTGAAACCTGGACACAAATTTTGTT
genomic: CCTGCACCTTACGATAAAATGAAGAGGATGGTCATTCCAGATGCGCTCAAgtgagtttta ... tcttgtacagAGTATTGAGGCTGAAACCTGGACACAAATTTTGTT
EST: gi|67578992|gb|BJ951143.1|BJ951143
EST:     CCTGCACCTTACGATAAAATGAAGAGGATGGTCATTCCAGATGCGCTCAA                         AGTATTGAGGCTGAAACCTGGACACAAATTTTGTTTGTTGGGCCGTTTGTC
genomic: CCTGCACCTTACGATAAAATGAAGAGGATGGTCATTCCAGATGCGCTCAAgtgagtttta ... tcttgtacagAGTATTGAGGCTGAAACCTGGACACAAATTTTGTTTGTTGGGCCGTTTGTC
EST: gi|18363651|gb|BJ195723.1|BJ195723
EST:     CCTGCACCTTACGATAAAATGAAGAGGATGGTCATTCCAGATGCGCTCAA                         AGTATTGAGGCTGAAACCTGGACACAAATTTTGTTTGTTGGGCCGTTTGTC
genomic: CCTGCACCTTACGATAAAATGAAGAGGATGGTCATTCCAGATGCGCTCAAgtgagtttta ... tcttgtacagAGTATTGAGGCTGAAACCTGGACACAAATTTTGTTTGTTGGGCCGTTTGTC
EST: gi|67716345|gb|BJ966605.1|BJ966605
EST:     CCTGCACCTTACGATAAAATGAAGAGGATGGTCATTCCAGATGCGCTCAA                         AGTATTGAGGCTGAAACCTGGACACAAATTTTGTTTGTTGGGCCGTTTGTC
genomic: CCTGCACCTTACGATAAAATGAAGAGGATGGTCATTCCAGATGCGCTCAAgtgagtttta ... tcttgtacagAGTATTGAGGCTGAAACCTGGACACAAATTTTGTTTGTTGGGCCGTTTGTC
EST: gi|162249130|gb|FC420381.1|FC420381
EST:     CCTGCACCTTACGATAAAATGAAGAGGATGGTCATTCCAGATGCGCTCAA                         AGTATTGAGGCTGAAACCTGGACACAAATTTTGTTTGTTGGGCCGTTTGTC
genomic: CCTGCACCTTACGATAAAATGAAGAGGATGGTCATTCCAGATGCGCTCAAgtgagtttta ... tcttgtacagAGTATTGAGGCTGAAACCTGGACACAAATTTTGTTTGTTGGGCCGTTTGTC
EST: gi|162246156|gb|FC423592.1|FC423592
EST:     CCTGCACCTTACGATAAAATGAAGAGGATGGTCATTCCAGATGCGCTCAA                         AGTATTGAGGCTGAAACCTGGACACAAATTTTGTTTGTTGGGCCGTTTGTC
genomic: CCTGCACCTTACGATAAAATGAAGAGGATGGTCATTCCAGATGCGCTCAAgtgagtttta ... tcttgtacagAGTATTGAGGCTGAAACCTGGACACAAATTTTGTTTGTTGGGCCGTTTGTC
EST: gi|67694095|gb|BJ954328.1|BJ954328
EST:     CCTGCACCTTACGATAAAATGAAGAGGATGGTCATTCCAGATGCGCTCAA                         AGTATTGAGGCTGAAACCTGGACACAAATTTTGTTTGTTGGGCCGTTTGTC
genomic: CCTGCACCTTACGATAAAATGAAGAGGATGGTCATTCCAGATGCGCTCAAgtgagtttta ... tcttgtacagAGTATTGAGGCTGAAACCTGGACACAAATTTTGTTTGTTGGGCCGTTTGTC
EST: gi|67507712|gb|BJ940592.1|BJ940592
EST:     CCTGCACCTTACGATAAAATGAAGAGGATGGTCATTCCAGATGCGCTCAA                         AGTATTGAGGCTGAAACCTGGACACAAATTTTGTTTGTTGGGCCGTTTGTC
genomic: CCTGCACCTTACGATAAAATGAAGAGGATGGTCATTCCAGATGCGCTCAAgtgagtttta ... tcttgtacagAGTATTGAGGCTGAAACCTGGACACAAATTTTGTTTGTTGGGCCGTTTGTC
EST: gi|67701102|gb|BJ961335.1|BJ961335
EST:     CCTGCACCTTACGATAAAATGAAGAGGATGGTCATTCCAGATGCGCTCAA                         AGTATTGAGGCTGAAACCTGGACACAAATTTTGTTTGTTGGGCCGTTTGTC
genomic: CCTGCACCTTACGATAAAATGAAGAGGATGGTCATTCCAGATGCGCTCAAgtgagtttta ... tcttgtacagAGTATTGAGGCTGAAACCTGGACACAAATTTTGTTTGTTGGGCCGTTTGTC
EST: gi|67695506|gb|BJ955739.1|BJ955739
EST:     CCTGCACCTTACGATAAAATGAAGAGGATGGTCATTCCAGATGCGCTCAA                         AGTATTGAGGCTGAAACCTGGACACAAATTTTGTTTGTTGGGCCGTTTGTC
genomic: CCTGCACCTTACGATAAAATGAAGAGGATGGTCATTCCAGATGCGCTCAAgtgagtttta ... tcttgtacagAGTATTGAGGCTGAAACCTGGACACAAATTTTGTTTGTTGGGCCGTTTGTC
EST: gi|37834782|gb|BJ592794.1|BJ592794
EST:     CCTGCACCTTACGATAAAATGAAGAGGATGGTCATTCCAGATGCGCTCAA                         AGTATTGAGGCTGAAACCTGGACACAAATTTTGTTTGTTGGGCCGTTTGTC
genomic: CCTGCACCTTACGATAAAATGAAGAGGATGGTCATTCCAGATGCGCTCAAgtgagtttta ... tcttgtacagAGTATTGAGGCTGAAACCTGGACACAAATTTTGTTTGTTGGGCCGTTTGTC
EST: gi|18342311|gb|BJ174346.1|BJ174346
EST:     CCTGCACCTTACGATAAAATGAAGAGGATGGTCATTCCAGATGCGCTCAA                         AGTATTGAGGCTGAAACCTGGACACAAATTTTGTTTGTTGGGCCGTTTGGT
genomic: CCTGCACCTTACGATAAAATGAAGAGGATGGTCATTCCAGATGCGCTCAAgtgagtttta ... tcttgtacagAGTATTGAGGCTGAAACCTGGACACAAATTTTGTTTGTTGGGCCGTTTG-T
EST: gi|67570797|gb|BJ943621.1|BJ943621
EST:     CCTGCACCTTACGATAAAATGAAGAGGATGGTCATTCCAGATGCGCTCAA                         AGTATTGAGGCTGAAACCTGGACACAAATTTTGTTTGTTGGGCCGTTTGTC
genomic: CCTGCACCTTACGATAAAATGAAGAGGATGGTCATTCCAGATGCGCTCAAgtgagtttta ... tcttgtacagAGTATTGAGGCTGAAACCTGGACACAAATTTTGTTTGTTGGGCCGTTTGTC
EST: gi|67724859|gb|BJ975118.1|BJ975118
EST:     CCTGCACCTTACGATAAAATGAAGAGGATGGTCATTCCAGATGCGCTCAA                         AGTATTGAGGCTGAAACCTGGACACAAATTTTGTTTGTTGGGCCGTTTGTC
genomic: CCTGCACCTTACGATAAAATGAAGAGGATGGTCATTCCAGATGCGCTCAAgtgagtttta ... tcttgtacagAGTATTGAGGCTGAAACCTGGACACAAATTTTGTTTGTTGGGCCGTTTGTC
EST: gi|162246155|gb|FC423591.1|FC423591
EST:     CCTGCACCTTACGATAAAATGAAGAGGATGGTCATTCCAGATGCGCTCAA                         AGTATTGAGGCTGAAACCTGGACACAAATTTTGTTTGTTGGGCCGTTTGTC
genomic: CCTGCACCTTACGATAAAATGAAGAGGATGGTCATTCCAGATGCGCTCAAgtgagtttta ... tcttgtacagAGTATTGAGGCTGAAACCTGGACACAAATTTTGTTTGTTGGGCCGTTTGTC
EST: gi|162277320|gb|FC453126.1|FC453126
EST:     CCTGCACCTTACGATAAAATGAAGAGGATGGTCATTCCAGATGCGCTCAA                         AGTATTGAGGCTGAAACCTGGACACAAATTTTGTTTGTTGGGCCGTTTGTC
genomic: CCTGCACCTTACGATAAAATGAAGAGGATGGTCATTCCAGATGCGCTCAAgtgagtttta ... tcttgtacagAGTATTGAGGCTGAAACCTGGACACAAATTTTGTTTGTTGGGCCGTTTGTC
EST: gi|162221684|gb|FC397909.1|FC397909
EST:     CCTGCACCTTACGATAAAATGAAGAGGATGGTCATTCCAGATGCGCTCAA                         AGTATTGAGGCTGAAACCTGGACACAAATTTTGTTTGTTGGGCCGTTTGTC
genomic: CCTGCACCTTACGATAAAATGAAGAGGATGGTCATTCCAGATGCGCTCAAgtgagtttta ... tcttgtacagAGTATTGAGGCTGAAACCTGGACACAAATTTTGTTTGTTGGGCCGTTTGTC
EST: gi|162277321|gb|FC453127.1|FC453127
EST:     CCTGCACCTTACGATAAAATGAAGAGGATGGTCATTCCAGATGCGCTCAA                         AGTATTGAGGCTGAAACCTGGACACAAATTTTGTTTGTTGGGCCGTTTGTC
genomic: CCTGCACCTTACGATAAAATGAAGAGGATGGTCATTCCAGATGCGCTCAAgtgagtttta ... tcttgtacagAGTATTGAGGCTGAAACCTGGACACAAATTTTGTTTGTTGGGCCGTTTGTC
EST: gi|162221683|gb|FC397908.1|FC397908
EST:     CCTGCACCTTACGATAAAATGAAGAGGATGGTCATTCCAGATGCGCTCAA                         AGTATTGAGGCTGAAACCTGGACACAAATTTTGTTTGTTGGGCCGTTTGTC
genomic: CCTGCACCTTACGATAAAATGAAGAGGATGGTCATTCCAGATGCGCTCAAgtgagtttta ... tcttgtacagAGTATTGAGGCTGAAACCTGGACACAAATTTTGTTTGTTGGGCCGTTTGTC
EST: gi|67508528|gb|BJ941392.1|BJ941392
EST:     CCTGCACCTTACGATAAAATGAAGAGGATGGTCATTCCAGATGCGCTCAA                         AGTATTGAGGCTGAAACCTGGACACAAATTTTGTTTGTTGGGCCGTTTGTC
genomic: CCTGCACCTTACGATAAAATGAAGAGGATGGTCATTCCAGATGCGCTCAAgtgagtttta ... tcttgtacagAGTATTGAGGCTGAAACCTGGACACAAATTTTGTTTGTTGGGCCGTTTGTC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 32

CCAAAAGAGGAGCTGCCGCCCTTGAGCGCCTGAAGGCCTTTGAAGGAGTACCTGCACCTTACGATAAAATGAAGAGGATGGTCATTCCAGATGCGCTCAAgtgagtttta ... tcttgtacagAGTATTGAGGCTGAAACCTGGACACAAATTTTGTTTGTTGGGCCGTTTGTCTGAGGAGGTCGGATGGCACCACTACGACACTATCAAGGAGTTGGAGGAG




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCAAAAGAGGAGCTGCCGCCCTTGAGCGCCTGAAGGCCTTTGAAGGAGTACCTGCACCTTACGATAAAATGAAGAGGATGGTCATTCCAGATGCGCTCAAgtgagttttaattgaaatctacgtctccattttggatattgttggttgtacatctacttgcactaagttacgtccgacggtagcgcaaatgtcatcacac

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGATG