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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGCCTGTCTTTCACAAGAAGgttagctgaaccctcttactcgtcatgagaatttctaatactagttttctttatcgcttacagcgtacttgctttatttcggttaaattttattgctgaa...

Basic information

species Physcomitrella patens
transcript PP1S74_73V6.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S74_73V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: LOC_Os07g33860.1 (Oryza sativa), 5'ss of exon 2
--------------------------------GGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGCCTGTCTTTCACAAGAAGgttagctgaaccctcttactcgtcatgagaatttctaatactagttttctttatcgcttacagcgtacttgctttatttcggttaa-attttattgctgaa-----
                                | ||| | ||||||||| | ||||| || || || || ||||||||||||||||| || |||||||||||   |||   |   |||    | || |     | |  |    |  |   |  ||  |   | | || | |  | ||   | || |  | | | ||||        
CAAGAAGGGTAAGGACAGCCTGTCTGCCCAGGGAAAGCGCCGTTATGACCGTAAGCAGTCAGGATATGGTGGTCAGACCAAGCCTGTTTTCCACAAGAAGgt--actgtgacagtttatatatgattatgcagtgttgtgtgtgactctctgttcattagaaacata-tggtgtcat---gattgatgtatcagtgctatgtgtct

upper sequence: PP1S74_73V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: LOC_Os07g33898.1 (Oryza sativa), 5'ss of exon 2
--------------------------------GGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGCCTGTCTTTCACAAGAAGgttagctgaaccctcttac-tcgtcatg-agaatt-tctaatactagttttctttatcg----cttacagcgtacttgctttatttcggttaaattttattgctgaa---------------------------------------------------------------------------------
                                | ||| | ||||||||| | ||||| || || || || ||||||||||||||||| || |||||||||||    |||    |  ||  |  | | | ||   | | |   | |   | |||| ||      | ||  | || | || ||| | || ||| |||   |                                                                                         
CAAGAAGGGTAAGGACAGCCTGTCTGCCCAGGGAAAGCGCCGTTATGACCGTAAGCAGTCAGGATATGGTGGTCAGACCAAGCCTGTTTTCCACAAGAAGgtattgtgacagtttatatgtgattacgcagtgctgtgtgtgattgtctctcttcattagaaacatatggtgt-catgatttgtgtctgttcaatgcaaacatgtggcaataaccatcatgtagttttaatgtatctgactttcagctgtgcatttttcatgttatgatacatggttcctgttttcag

upper sequence: PP1S74_73V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: LOC_Os07g33880.1 (Oryza sativa), 5'ss of exon 2
--------------------------------GGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGCCTGTCTTTCACAAGAAGgttagctgaaccctcttac-tcgtcatg-agaatt---tctaatactagttttctttatcgcttacagcgtacttgctttattt--cggttaaattttattgctgaa-------------------------------------------------------------------------------------------
                                | ||| | ||||||||| | ||||| || || || || ||||||||||||||||| || |||||||||||    |||    |  ||  |  | ||| ||  ||   | | |  ||   ||  ||     | ||| | || | || || || |  | || | || |   ||   ||                                                                                           
CAAGAAGGGTAAGGACAGCCTGTCTGCCCAGGGAAAGCGCCGTTATGACCGAAAGCAGTCAGGATATGGTGGTCAGACCAAGCCTGTTTTCCACAAGAAGgtactgtgacagtttatatatgattatgcagtgttgtgtgtgactctctgttcattagaaacgtacggtgt-catgattgatgtagcagtgatatgtgtctgtacaatgcatgtggcaataaccatcacgtagttttaattgcatgtggctttcagctgtgcatttttcatgttatgatacatggttcctgttttcag

upper sequence: PP1S74_73V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GRMZM2G125527_T02 (Zea mays), 5'ss of exon 2
--------------------------------GGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGCCTGTCTTTCACAAGAAGgtta---gctgaaccctcttactcgtcatgagaatttc--------taatactagttttctttatcgcttacagc-gtacttgctttatttcggttaaatt-ttattgctgaa---------------------------------
                                | ||| | ||||||||| | ||||| || || || || |||||||||||||||||||| ||||||||||| |        | |   ||  | ||  | | |  ||         | || ||||  |   |    |   | | | |    | ||  ||  | ||| | |  ||| ||  | |                                 
TAAGAAGGGCAAGGATAGCCTGTCTGCCCAGGGAAAGCGCCGTTATGACCGCAAGCAGTCAGGATATGGTGGTCAGACCAAGCCTGTCTTCCACAAGAAGgtaatgcagcatatctatttgattgtacttatacctttgtctgttttgatgctagcatgaatgtctgaaaatatctgcgaattctaaatgcctgttcagtgattaatgtgggatatgacaaatgagattgtatttatacctttcag

upper sequence: PP1S74_73V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GRMZM2G103059_T01 (Zea mays), 5'ss of exon 2
--------------------------------GGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGCCTGTCTTTCACAAGAAGgttagctgaaccctcttactcgtcatgagaatttctaatactagttttctttatcgcttacagcgtacttgctttatttcggttaaattttattgctgaa-----------------------------------------------
                                | ||| | ||||||||| | ||||| || ||  | || |||||||||||||||||||| ||||||||||| |    |    |||   |  |  |    ||  ||  |    |||||  |  | || |  |          | | |     ||  |  |   || |||                                                
TAAGAAGGGCAAGGATAGCATGTCTGCCCAGGGAAAGCGTCGTTATGACCGCAAGCAGTCAGGACATGGTGGTCAGACCAAGCCTGTCTTCCACAAGAAGgtaatgcaacatatctatttgattgtacttatacctt-tgtctgttttgatggtagcatgaatgtctagaaatatctgcgaattctaaatgcctgttgagagaataatttgggatatgacaaatgtgattgtattaatacctttcag

upper sequence: PP1S74_73V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GRMZM2G009412_T01 (Zea mays), 5'ss of exon 2
--------------------------------GGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGCCTGTCTTTCACAAGAAGgttagctgaaccctcttactcgtcatgagaatt--tctaatactagttt-tctttatcgcttacagcgt--acttgctttatttcggttaaattttattgctgaa-------------------------------------------------
                                | ||| | ||||||||| | ||||| || || || || || ||||||||||||||||| ||||||||||| |    |     | ||   |     |  |||  || |  | |  ||  ||||| ||  ||     |    | ||    | |     ||| |   ||| || ||                                                 
CAAGAAGGGTAAGGATAGCCTGTCTGCCCAGGGAAAGCGCCGTTATGACCGCAAGCAGTCAGGATATGGTGGCCAGACCAAGCCTGTCTTCCACAAGAAGgt-aatgaagtatacctatgtgattgtactattgctccatcaatccttcatctttgtccgttttgatgctagcatgaaagactgaaaataactaccatttctaaatgtctgttgggtgcacagattgggatatgacaaatgttgtgattttcag

upper sequence: PP1S74_73V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: AT4G14320.1 (Arabidopsis thaliana), 5'ss of exon 2
--------------------------------GGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGCCTGTCTTTCACAAGAAGgttagctgaaccctcttactcgtcatgagaatttctaatactagttttctttat-----cgcttacagcgtacttgctttatttcggttaaattt-tattgctgaa-------------------------------------------------
                                | ||| | ||||||||  | || ||||| ||||| ||||||||||||||||| ||||| |||||||||||   ||   | || || || ||| |||   | ||||||    || |||| | |     |   |  ||  |    |  ||   || || |||| | | ||   | |                                                 
TAAGAAAGGTAAAGATAGCCTTGCTGCCCAAGGAAAGCGTCGTTATGATCGTAAACAATCTGGTTATGGAGGTCAGACCAAGCCCGTCTTCCACAAGAAGgtatact---cgcttttccttgtcttga---tctctaattactgtcttctatgtgagaaccaatttaggatttcagaattgactctgtgaaatatgtcttataggaatgatttgttaattggaccttgctcattatttgtctttctttggaacag

upper sequence: PP1S74_73V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: AT3G23390.1 (Arabidopsis thaliana), 5'ss of exon 2
--------------------------------GGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGCCTGTCTTTCACAAGAAGgttagctgaaccctcttactcgtcatgagaatttctaatactagttttcttta-tcgcttacagcgtacttgcttta---------tttcggttaaattttattgctgaa----------------------------------------------------------------------
                                | ||| | ||||||||| | || ||||| ||||| || |||||||| ||||||||||| ||||| ||||| |  |  |   || | |   |     |  |||  | |   | ||   | || |   ||  |  |   | | ||||         ||   ||  ||||||     |||                                                                       
CAAGAAGGGTAAAGACAGTCTTGCTGCTCAAGGAAAGCGTCGTTATGACCGTAAACAATCTGGTTATGGTGGTCAGACTAAGCCTGTCTTCCACAAAAAGgtaacattgattatcatgc--attgattgttttttcagtttgaattaggtctagttagttgaaatgaggtagttttaaggaaccatttatagtagaattttggaagtgagctgtgaggaaacagacattccaatagtctcagttttggactgagatacatcttgtgaatcttgttaacag

upper sequence: PP1S74_73V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: EDP05070 (Chlamydomonas reinhardtii), 5'ss of exon 3
GGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGCCTGTCTTTCACAAGAAGgttagctgaaccctcttactcgtcatgagaatttctaatactagttttctttatcgcttacagcgtacttgctttatttcggttaaattttattgctgaa----
| ||| | || || ||| | ||||| || |||||||| |||||||||||||| ||||| |||||||||||  || ||     ||  | || ||||  |    |  || || |   |  | | ||  |  || |     | |    |  || | | |  |   || |      
GCAAGCGCCGCTACGACCGCAAGCAGTCGGGTTACGGTGGTCAGACCAAGCCCGTCTTCCACAAGAAGgtgcgc-gacagagctggcgcggcatgttatgggcgtat-cttgaagtggtgaccg--tggaggggtgggggtggggtgaggctgagtgctggcgcagcggatg

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18333530|gb|BJ165545.1|BJ165545
EST:     GGAAGCAATCCGGTTACGGAGGTCAGACCAAGCCTGTCTTTCACAAGAAG                         GCCAAGACCACAAAGAAGATTGTGCTTAGGTTGCAATGTCAGGCTTGCAAG
genomic: GGAAGCAATCCGGTTACGGAGGTCAGACCAAGCCTGTCTTTCACAAGAAGgttagctgaa ... ttgttctcagGCCAAGACCACAAAGAAGATTGTGCTTAGGTTGCAATGTCAGGCTTGCAAG
EST: gi|162240633|gb|FC419371.1|FC419371
EST:     GGAAGCAATCCGGTTACGGAGGTCAGACCAAGCCTGTCTTTCACAAGAAG                         GCCAAGACCACAAAGAAGATTGTGCTTAGGTTGCAATGTCAGGCTTGCAAG
genomic: GGAAGCAATCCGGTTACGGAGGTCAGACCAAGCCTGTCTTTCACAAGAAGgttagctgaa ... ttgttctcagGCCAAGACCACAAAGAAGATTGTGCTTAGGTTGCAATGTCAGGCTTGCAAG
EST: gi|6166933|gb|AW145197.1|AW145197
EST:     GGAAGCAATCCGGTTACGGAGGTCAGACCAAGCCTGTCTTTCACAAGAAG                         GCCAAGACCACANAGAAGATTGTGCTTAGGTTGCAATGTCAGGCTTG-AAG
genomic: GGAAGCAATCCGGTTACGGAGGTCAGACCAAGCCTGTCTTTCACAAGAAGgttagctgaa ... ttgttctcagGCCAAGACCACAAAGAAGATTGTGCTTAGGTTGCAATGTCAGGCTTGCAAG
EST: gi|19778932|gb|BQ039383.1|BQ039383
EST:     GGAAGCAATCCGGTTACGGAGGTCAGACCAAGCCTGTCTTTCACAAGAAG                         GCCAAGACCACAAAGAAGATTGTGCTTAGGTTGCAATGTCAGGCTTGCAAG
genomic: GGAAGCAATCCGGTTACGGAGGTCAGACCAAGCCTGTCTTTCACAAGAAGgttagctgaa ... ttgttctcagGCCAAGACCACAAAGAAGATTGTGCTTAGGTTGCAATGTCAGGCTTGCAAG
EST: gi|7583124|gb|AW699288.1|AW699288
EST:     GGAAGCAATCCGGTTACGGAGGTCAGACCAAGCCTGTCTTTCACAAGAAG                         GCCAAGACCACAAAGAAGATTGTGCTTAGGTTGCAATGTCAGGCTTGCAAG
genomic: GGAAGCAATCCGGTTACGGAGGTCAGACCAAGCCTGTCTTTCACAAGAAGgttagctgaa ... ttgttctcagGCCAAGACCACAAAGAAGATTGTGCTTAGGTTGCAATGTCAGGCTTGCAAG
EST: gi|162253144|gb|FC428976.1|FC428976
EST:     GGAAGCAATCCGGTTACGGAGGTCAGACCAAGCCTGTCTTTCACAAGAAG                         GCCAAGACCACAAAGAAGATTGTGCTTAGGTTGCAATGTCAGGCTTGCAAG
genomic: GGAAGCAATCCGGTTACGGAGGTCAGACCAAGCCTGTCTTTCACAAGAAGgttagctgaa ... ttgttctcagGCCAAGACCACAAAGAAGATTGTGCTTAGGTTGCAATGTCAGGCTTGCAAG
EST: gi|162226401|gb|FC403317.1|FC403317
EST:     GGAAGCAATCCGGTTACGGAGGTCAGACCAAGCCTGTCTTTCACAAGAAG                         GCCAAGACCACAAAGAAGATTGTGCTTAGGTTGCAATGTCAGGCTTGCAAG
genomic: GGAAGCAATCCGGTTACGGAGGTCAGACCAAGCCTGTCTTTCACAAGAAGgttagctgaa ... ttgttctcagGCCAAGACCACAAAGAAGATTGTGCTTAGGTTGCAATGTCAGGCTTGCAAG
EST: gi|7286483|gb|AW598970.1|AW598970
EST:     GGAAGCAATCCGGTTACGGAGGTCAGACCAAGCCTGTCTTTCACAAGAAG                         GCCAAGACCACAAAGAAGATTGTGCTTAGGTTGCAATGTCAGGCTTGCAAG
genomic: GGAAGCAATCCGGTTACGGAGGTCAGACCAAGCCTGTCTTTCACAAGAAGgttagctgaa ... ttgttctcagGCCAAGACCACAAAGAAGATTGTGCTTAGGTTGCAATGTCAGGCTTGCAAG
EST: gi|162247250|gb|FC421397.1|FC421397
EST:     GGAAGCAATCCGGTTACGGAGGTCAGACCAAGCCTGTCTTTCACAAGAAG                         GCCAAGACCACAAAGAAGATTGTGCTTAGGTTGCAATGTCAGGCTTGCAAG
genomic: GGAAGCAATCCGGTTACGGAGGTCAGACCAAGCCTGTCTTTCACAAGAAGgttagctgaa ... ttgttctcagGCCAAGACCACAAAGAAGATTGTGCTTAGGTTGCAATGTCAGGCTTGCAAG
EST: gi|7648293|gb|AW739276.1|AW739276
EST:     GGAAGCAATCCGGTTACGGAGGTCAGACCAAGCCTGTCTTTCACAAGAAG                         GCCAAGACCACAAAGAAGATTGTGCTTAGGTTGCAATGTCAGGCTTGCAAG
genomic: GGAAGCAATCCGGTTACGGAGGTCAGACCAAGCCTGTCTTTCACAAGAAGgttagctgaa ... ttgttctcagGCCAAGACCACAAAGAAGATTGTGCTTAGGTTGCAATGTCAGGCTTGCAAG
EST: gi|37837319|gb|BJ595327.1|BJ595327
EST:     GGAAGCAATCCGGTTACGGAGGTCAGACCAAGCCTGTCTTTCACAAGAAG                         GCCAAGACCACAGAGAAGATTGTGCTTAGGTTGCAATGTCAGGCTTGCAAG
genomic: GGAAGCAATCCGGTTACGGAGGTCAGACCAAGCCTGTCTTTCACAAGAAGgttagctgaa ... ttgttctcagGCCAAGACCACAAAGAAGATTGTGCTTAGGTTGCAATGTCAGGCTTGCAAG
EST: gi|7286770|gb|AW599257.1|AW599257
EST:     GGAAGCAATCCGGTTACGGAGGTCAGACCAAGCCTGTCTTTCACAAGAAG                         GCCAAGACCACAAAGAAGATTGTGCTTAGGTTGCAATGTCAGGCTTGCAAG
genomic: GGAAGCAATCCGGTTACGGAGGTCAGACCAAGCCTGTCTTTCACAAGAAGgttagctgaa ... ttgttctcagGCCAAGACCACAAAGAAGATTGTGCTTAGGTTGCAATGTCAGGCTTGCAAG
EST: gi|162238602|gb|FC418978.1|FC418978
EST:     GGAAGCAATCCGGTTACGGAGGTCAGACCAAGCCTGTCTTTCACAAGAAG                         GCCAAGACCACAAAGAAGATTGTGCTTAGGTTGCAATGTCAGGCTTGCAAG
genomic: GGAAGCAATCCGGTTACGGAGGTCAGACCAAGCCTGTCTTTCACAAGAAGgttagctgaa ... ttgttctcagGCCAAGACCACAAAGAAGATTGTGCTTAGGTTGCAATGTCAGGCTTGCAAG
EST: gi|162237489|gb|FC412987.1|FC412987
EST:     GGAAGCAATCCGGTTACGGAGGTCAGACCAAGCCTGTCTTTCACAAGAAG                         GCCAAGACCACAAAGAAGATTGTGCTTAGGTTGCAATGTCAGGCTTGCAAG
genomic: GGAAGCAATCCGGTTACGGAGGTCAGACCAAGCCTGTCTTTCACAAGAAGgttagctgaa ... ttgttctcagGCCAAGACCACAAAGAAGATTGTGCTTAGGTTGCAATGTCAGGCTTGCAAG
EST: gi|37853211|gb|BJ611219.1|BJ611219
EST:     GGAAGCAATCCGGTTACGGAGGTCAGACCAAGCCTGTCTTTCNCAAGAAG                         GCCAAGACCACAAAGAAGATTGTGCTTAGGTTGCAATGTCAGGCTTGCAAG
genomic: GGAAGCAATCCGGTTACGGAGGTCAGACCAAGCCTGTCTTTCACAAGAAGgttagctgaa ... ttgttctcagGCCAAGACCACAAAGAAGATTGTGCTTAGGTTGCAATGTCAGGCTTGCAAG
EST: gi|162207222|gb|FC382544.1|FC382544
EST:     GGAAGCAATCCGGTTACGGAGGTCAGACCAAGCCTGTCTTTCACAAGAAG                         GCCAAGACCACAAAGAAGATTGTGCTTAGGTTGCAATGTCAGGCTTGCAAG
genomic: GGAAGCAATCCGGTTACGGAGGTCAGACCAAGCCTGTCTTTCACAAGAAGgttagctgaa ... ttgttctcagGCCAAGACCACAAAGAAGATTGTGCTTAGGTTGCAATGTCAGGCTTGCAAG
EST: gi|162237488|gb|FC412986.1|FC412986
EST:     GGAAGCAATCCGGTTACGGAGGTCAGACCAAGCCTGTCTTTCACAAGAAG                         GCCAAGACCACAAAGAAGATTGTGCTTAGGTTGCAATGTCAGGCTTGCAAG
genomic: GGAAGCAATCCGGTTACGGAGGTCAGACCAAGCCTGTCTTTCACAAGAAGgttagctgaa ... ttgttctcagGCCAAGACCACAAAGAAGATTGTGCTTAGGTTGCAATGTCAGGCTTGCAAG
EST: gi|162227433|gb|FC403167.1|FC403167
EST:     GGAAGCAATCCGGTTACGGAGGTCAGACCAAGCCTGTCTTTCACAAGAAG                         GCCAAGACCACAAAGAAGATTGTGCTTAGGTTGCAATGTCAGGCTTGCAAG
genomic: GGAAGCAATCCGGTTACGGAGGTCAGACCAAGCCTGTCTTTCACAAGAAGgttagctgaa ... ttgttctcagGCCAAGACCACAAAGAAGATTGTGCTTAGGTTGCAATGTCAGGCTTGCAAG
EST: gi|162251686|gb|FC426092.1|FC426092
EST:     GGAAGCAATCCGGTTACGGAGGTCAGACCAAGCCTGTCTTTCACAAGAAG                         GCCAAGACCACAAAGAAGATTGTGCTTAGGTTGCAATGTCAGGCTTGCAAG
genomic: GGAAGCAATCCGGTTACGGAGGTCAGACCAAGCCTGTCTTTCACAAGAAGgttagctgaa ... ttgttctcagGCCAAGACCACAAAGAAGATTGTGCTTAGGTTGCAATGTCAGGCTTGCAAG
EST: gi|162215763|gb|FC390828.1|FC390828
EST:     GGAAGCAATCCGGTTACGGAGGTCAGACCAAGCCTGTCTTTCACAAGAAG                         GCCAAGACCACAAAGAAGATTGTGCTTAGGTTGCAATGTCAGGCTTGCAAG
genomic: GGAAGCAATCCGGTTACGGAGGTCAGACCAAGCCTGTCTTTCACAAGAAGgttagctgaa ... ttgttctcagGCCAAGACCACAAAGAAGATTGTGCTTAGGTTGCAATGTCAGGCTTGCAAG
EST: gi|15262193|gb|BI437503.1|BI437503
EST:     GGAAGCAATCCGGTTACGGAGGTCAGACCAAGCCTGTCTTTCACAAGAAG                         GCCAAGACCACAAAGAAGATTGTGCTTAGGTTGCAATGTCAGGCTTGCAAG
genomic: GGAAGCAATCCGGTTACGGAGGTCAGACCAAGCCTGTCTTTCACAAGAAGgttagctgaa ... ttgttctcagGCCAAGACCACAAAGAAGATTGTGCTTAGGTTGCAATGTCAGGCTTGCAAG
EST: gi|162238601|gb|FC418977.1|FC418977
EST:     GGAAGCAATCCGGTTACGGAGGTCAGACCAAGCCTGTCTTTCACAAGAAG                         GCCAAGACCACAAAGAAGATTGTGCTTAGGTTGCAATGTCAGGCTTGCAAG
genomic: GGAAGCAATCCGGTTACGGAGGTCAGACCAAGCCTGTCTTTCACAAGAAGgttagctgaa ... ttgttctcagGCCAAGACCACAAAGAAGATTGTGCTTAGGTTGCAATGTCAGGCTTGCAAG
EST: gi|162242300|gb|FC418877.1|FC418877
EST:     GGAAGCAATCCGGTTACGGAGGTCAGACCAAGCCTGTCTTTCACAAGAAG                         GCCAAGACCACAAAGAAGATTGTGCTTAGGTTGCAATGTCAGGCTTGCAAG
genomic: GGAAGCAATCCGGTTACGGAGGTCAGACCAAGCCTGTCTTTCACAAGAAGgttagctgaa ... ttgttctcagGCCAAGACCACAAAGAAGATTGTGCTTAGGTTGCAATGTCAGGCTTGCAAG
EST: gi|19790859|gb|BQ042093.1|BQ042093
EST:     GGAAGCAATCCGGTTACGGAGGTCAGACCAAGCCTGTCTTTCACAAGAAG                         GCCAAGACCACAAAGAAGATTGTGCTTAGGTTGCAATGTCAGGCTTGCAAG
genomic: GGAAGCAATCCGGTTACGGAGGTCAGACCAAGCCTGTCTTTCACAAGAAGgttagctgaa ... ttgttctcagGCCAAGACCACAAAGAAGATTGTGCTTAGGTTGCAATGTCAGGCTTGCAAG
EST: gi|18325570|gb|BJ157567.1|BJ157567
EST:     GGAAGCAATCCGGTTACGGAGGTCAGACCAAGCCTGTCTTTCACAAGAAG                         GCCAAGACCACAAAGAAGATTGTGCTTAGGTTGCAATGTCAGGCTTGCAAG
genomic: GGAAGCAATCCGGTTACGGAGGTCAGACCAAGCCTGTCTTTCACAAGAAGgttagctgaa ... ttgttctcagGCCAAGACCACAAAGAAGATTGTGCTTAGGTTGCAATGTCAGGCTTGCAAG
EST: gi|162253143|gb|FC428975.1|FC428975
EST:     GGAAGCAATCCGGTTACGGAGGTCAGACCAAGCCTGTCTTTCACAAGAAG                         GCCAAGACCACAAAGAAGATTGTGCTTAGGTTGCAATGTCAGGCTTGCAAG
genomic: GGAAGCAATCCGGTTACGGAGGTCAGACCAAGCCTGTCTTTCACAAGAAGgttagctgaa ... ttgttctcagGCCAAGACCACAAAGAAGATTGTGCTTAGGTTGCAATGTCAGGCTTGCAAG
EST: gi|162243013|gb|FC417861.1|FC417861
EST:     GGAAGCAATCCGGTTACGGAGGTCAGACCAAGCCTGTTTTTCACAAGAAG                         GCCAAGACCACAAAGAAGATTGTGCTTAGGTTGCAATGTCAGGCTTGCAAG
genomic: GGAAGCAATCCGGTTACGGAGGTCAGACCAAGCCTGTCTTTCACAAGAAGgttagctgaa ... ttgttctcagGCCAAGACCACAAAGAAGATTGTGCTTAGGTTGCAATGTCAGGCTTGCAAG
EST: gi|67575708|gb|BJ948532.1|BJ948532
EST:     GGAAGCAATCCGGTTACGGAGGTCAGACCAAGCCTGTCTTTCACAAGAAG                         GCCAAGACCACAAAGAAGATTGTGCTT
genomic: GGAAGCAATCCGGTTACGGAGGTCAGACCAAGCCTGTCTTTCACAAGAAGgttagctgaa ... ttgttctcagGCCAAGACCACAAAGAAGATTGTGCTT
EST: gi|162201010|gb|FC378141.1|FC378141
EST:     GGAAGCAATCCGGTTACGGAGGTCAGACCAAGCCTGTCTTTCACAAGAAG                         GCCAAGACCACAAAGAAGATTGTGCTTAGGTTGCAATGTCAGGCTTGCAAG
genomic: GGAAGCAATCCGGTTACGGAGGTCAGACCAAGCCTGTCTTTCACAAGAAGgttagctgaa ... ttgttctcagGCCAAGACCACAAAGAAGATTGTGCTTAGGTTGCAATGTCAGGCTTGCAAG
EST: gi|162234136|gb|FC410350.1|FC410350
EST:     GGAAGCAATCCGGTTACGGAGGTCAGACCAAGCCTGTCTTTCACAAGAAG                         GCCAAGACCACAAAGAAGATTGTGCTTAGGTTGCAATGTCAGGCTTGCAAG
genomic: GGAAGCAATCCGGTTACGGAGGTCAGACCAAGCCTGTCTTTCACAAGAAGgttagctgaa ... ttgttctcagGCCAAGACCACAAAGAAGATTGTGCTTAGGTTGCAATGTCAGGCTTGCAAG
EST: gi|162217327|gb|FC392795.1|FC392795
EST:     GGAAGCAATCCGGTTACGGAGGTCAGACCAAGCCTGTCTTTCACAAGAAG                         GCCAAGACCACAAAGAAGATTGTGCTTAGGTTGCAATGTCAGGCTTGCAAG
genomic: GGAAGCAATCCGGTTACGGAGGTCAGACCAAGCCTGTCTTTCACAAGAAGgttagctgaa ... ttgttctcagGCCAAGACCACAAAGAAGATTGTGCTTAGGTTGCAATGTCAGGCTTGCAAG
EST: gi|15327129|gb|BI487613.1|BI487613
EST:     GGAAGCAATCCGGTTACGGAGGTCAGACCAAGCCTGTCTTTCACAAGAAG                         GCCAAGACCACAAAGAAGATTGTGCTTAGGTTGCAATGTCAGGCTTGCAAG
genomic: GGAAGCAATCCGGTTACGGAGGTCAGACCAAGCCTGTCTTTCACAAGAAGgttagctgaa ... ttgttctcagGCCAAGACCACAAAGAAGATTGTGCTTAGGTTGCAATGTCAGGCTTGCAAG
EST: gi|162204495|gb|FC380800.1|FC380800
EST:     GGAAGCAATCCGGTTACGGAGGTCAGACCAAGCCTGTTTTTCACAAGAAG                         GCCAAGACCACAAAGAAGATTGTGCTTAGGTTGCAATGTCAGGCTTGCAAG
genomic: GGAAGCAATCCGGTTACGGAGGTCAGACCAAGCCTGTCTTTCACAAGAAGgttagctgaa ... ttgttctcagGCCAAGACCACAAAGAAGATTGTGCTTAGGTTGCAATGTCAGGCTTGCAAG
EST: gi|162218149|gb|FC394986.1|FC394986
EST:     GGAAGCAATCCGGTTACGGAGGTCAGACCAAGCCTGTCTTTCACAAGAAG                         GCCAAGACCACAAAGAAGATTGTGCTTAGGTTGCAATGTCAGGCTTGCAAG
genomic: GGAAGCAATCCGGTTACGGAGGTCAGACCAAGCCTGTCTTTCACAAGAAGgttagctgaa ... ttgttctcagGCCAAGACCACAAAGAAGATTGTGCTTAGGTTGCAATGTCAGGCTTGCAAG
EST: gi|18357955|gb|BJ190014.1|BJ190014
EST:     GGAAGCAATCCGGTTACGGAGGTCAGACCAAGCCTGTCTTTCACAAGAAG                         GCCAAGACCACAGAGAAGATTGTGCTTAGGTTGCAATGTCAGGCTTGCAAG
genomic: GGAAGCAATCCGGTTACGGAGGTCAGACCAAGCCTGTCTTTCACAAGAAGgttagctgaa ... ttgttctcagGCCAAGACCACAAAGAAGATTGTGCTTAGGTTGCAATGTCAGGCTTGCAAG
EST: gi|67699190|gb|BJ959423.1|BJ959423
EST:     GGAAGCAATCCGGTTACGGAGGTCAGACCAAGCCTGTCTTTCACAAGAAG                         GCCAAGACCACAAAGAAGATTGTGCTTAGGTTGCAATGTCAGGCTTGCAAG
genomic: GGAAGCAATCCGGTTACGGAGGTCAGACCAAGCCTGTCTTTCACAAGAAGgttagctgaa ... ttgttctcagGCCAAGACCACAAAGAAGATTGTGCTTAGGTTGCAATGTCAGGCTTGCAAG
EST: gi|162233666|gb|FC409425.1|FC409425
EST:     GGAAGCAATCCGGTTACGGAGGTCAGACCAAGCCTGTCTTTCACAAGAAG                         GCCAAGACCACAAAGAAGATTGTGCTTAGGTTGCAATGTCAGGCTTGCAAG
genomic: GGAAGCAATCCGGTTACGGAGGTCAGACCAAGCCTGTCTTTCACAAGAAGgttagctgaa ... ttgttctcagGCCAAGACCACAAAGAAGATTGTGCTTAGGTTGCAATGTCAGGCTTGCAAG
EST: gi|162215762|gb|FC390827.1|FC390827
EST:     GGAAGCAATCCGGTTACGGAGGTCAGACCAAGCCTGTCTTTCACAAGAAG                         GCCAAGACCACAAAGAAGATTGTGCTTAGGTTGCAATGTCAGGCTTGCAAG
genomic: GGAAGCAATCCGGTTACGGAGGTCAGACCAAGCCTGTCTTTCACAAGAAGgttagctgaa ... ttgttctcagGCCAAGACCACAAAGAAGATTGTGCTTAGGTTGCAATGTCAGGCTTGCAAG
EST: gi|18359810|gb|BJ191871.1|BJ191871
EST:     GGAAGCAATCCGGTTACGGAGGTCAGACCAAGCCTGTCTTTCACAAGAAG                         GCCAAGACCACAAAGAAGATTGTGCTTAGGTTGCAATGTCAGGCTTGCAAG
genomic: GGAAGCAATCCGGTTACGGAGGTCAGACCAAGCCTGTCTTTCACAAGAAGgttagctgaa ... ttgttctcagGCCAAGACCACAAAGAAGATTGTGCTTAGGTTGCAATGTCAGGCTTGCAAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 34 (upstream exon), 35 (downstream exon)
Score: 108

GGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGCCTGTCTTTCACAAGAAGgttagctgaa ... ttgttctcagGCCAAGACCACAAAGAAGATTGTGCTTAGGTTGCAATGTCAGGCTTGCAAGCATGTGACTCAACATCCCATCAAG




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGAAGAGGCGTTATGACAGGAAGCAATCCGGTTACGGAGGTCAGACCAAGCCTGTCTTTCACAAGAAGgttagctgaaccctcttactcgtcatgagaatttctaatactagttttctttatcgcttacagcgtacttgctttatttcggttaaattttattgctgaa

- - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG