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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAGgtaaagctcagataaatatctcccaatacgtcgtagcatacgtaggtgatagtgtgctgtctctgtagcgctctggtatttgatgctcacaattaacctgtggtctgcttgctatgactacag

Basic information

species Physcomitrella patens
transcript PP1S74_140V6.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208364850|gb|DC957887.1|DC957887
EST:     GTACAAGGAACTNGCTGCCCATCCCGATGTAGAGTACATTGCAGGAG                         GTGCTACTCAGAACACCATCAGGATTGCCCAG
genomic: GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAGgtaaagctca ... atgactacagGTGCTACTCAGAACACCATCAGGATTGCCCAG
EST: gi|162162985|gb|FC338167.1|FC338167
EST:     GTACAAGGAACTGTCTGCCAATCCCGATGTAGAGTACATTGCAGGAG                         GTGCTACTCAGAACACCATCAGGATTGCCCAG
genomic: GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAGgtaaagctca ... atgactacagGTGCTACTCAGAACACCATCAGGATTGCCCAG
EST: gi|208383807|gb|DC928082.1|DC928082
EST:     GTACAAGGAACTGGCTGCCCATCCCGATGTAGAGTACATTGCAGGAG                         GTGCTACTCAGAACACCATCAGGATTGCCCAG
genomic: GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAGgtaaagctca ... atgactacagGTGCTACTCAGAACACCATCAGGATTGCCCAG
EST: gi|208386389|gb|DC937056.1|DC937056
EST:     GTACAAGGAACTGGCTGCCAATCCCGATGTANAGTACATTGCAGGAG                         GTGCTACTCAGAACACCATCAGGATTGCCCAG
genomic: GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAGgtaaagctca ... atgactacagGTGCTACTCAGAACACCATCAGGATTGCCCAG
EST: gi|208370737|gb|DC936859.1|DC936859
EST:     GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG                         GTGCTACTCAGAACACCATCAGGATTGCCCAG
genomic: GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAGgtaaagctca ... atgactacagGTGCTACTCAGAACACCATCAGGATTGCCCAG
EST: gi|208372953|gb|DC940584.1|DC940584
EST:     GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG                         GTGCTACTCAGAACACCATCAGGATTGCCCAG
genomic: GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAGgtaaagctca ... atgactacagGTGCTACTCAGAACACCATCAGGATTGCCCAG
EST: gi|18330051|gb|BJ162057.1|BJ162057
EST:     GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG                         GTGCTACTCAGAACACCATCAGGATTGCCCAG
genomic: GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAGgtaaagctca ... atgactacagGTGCTACTCAGAACACCATCAGGATTGCCCAG
EST: gi|67704109|gb|BJ964342.1|BJ964342
EST:     GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG                         GTGCTACTCAGAACACCATCAGGATTGCCCAG
genomic: GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAGgtaaagctca ... atgactacagGTGCTACTCAGAACACCATCAGGATTGCCCAG
EST: gi|208391627|gb|DC938240.1|DC938240
EST:     GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG                         GTGCTACTCAGAACACCATCAGGATTGCCCAG
genomic: GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAGgtaaagctca ... atgactacagGTGCTACTCAGAACACCATCAGGATTGCCCAG
EST: gi|208360344|gb|DC930753.1|DC930753
EST:     GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG                         GTGCTACTCAGAACACCATCAGGATTGCCCAG
genomic: GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAGgtaaagctca ... atgactacagGTGCTACTCAGAACACCATCAGGATTGCCCAG
EST: gi|162175919|gb|FC351597.1|FC351597
EST:     GTACAAGGAACTGTCTGCCAATCCCGATGTAGAGTACATTGCAGGAG                         GTGCTACTCAGAACACCATCAGGATTGCCCAG
genomic: GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAGgtaaagctca ... atgactacagGTGCTACTCAGAACACCATCAGGATTGCCCAG
EST: gi|208349412|gb|DC910429.1|DC910429
EST:     GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG                         GTGCTACTCAGAACACCATCAGGATTGCCCAG
genomic: GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAGgtaaagctca ... atgactacagGTGCTACTCAGAACACCATCAGGATTGCCCAG
EST: gi|208376730|gb|DC902925.1|DC902925
EST:     GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG                         GTGCTACTCAGAACACCATCAGGATTGCCCAG
genomic: GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAGgtaaagctca ... atgactacagGTGCTACTCAGAACACCATCAGGATTGCCCAG
EST: gi|208388767|gb|DC941776.1|DC941776
EST:     GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG                         GTGCTACTCAGAACACCATCAGGATTGCCCAG
genomic: GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAGgtaaagctca ... atgactacagGTGCTACTCAGAACACCATCAGGATTGCCCAG
EST: gi|67704587|gb|BJ964820.1|BJ964820
EST:     GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG                         GTGCTACTCAGAACACCATCAGGATTGCCCAG
genomic: GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAGgtaaagctca ... atgactacagGTGCTACTCAGAACACCATCAGGATTGCCCAG
EST: gi|18326813|gb|BJ158813.1|BJ158813
EST:     GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG                         GTGCTACTCAGAACACCATCAGGATTGCCCAG
genomic: GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAGgtaaagctca ... atgactacagGTGCTACTCAGAACACCATCAGGATTGCCCAG
EST: gi|208400413|gb|DC908640.1|DC908640
EST:     GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG                         GTGCTACTCAGAACACCATCAGGATTGCCCAG
genomic: GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAGgtaaagctca ... atgactacagGTGCTACTCAGAACACCATCAGGATTGCCCAG
EST: gi|18363954|gb|BJ196027.1|BJ196027
EST:     GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG                         GTGCTACTCAGAACACCATCAGGATTGCCCAG
genomic: GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAGgtaaagctca ... atgactacagGTGCTACTCAGAACACCATCAGGATTGCCCAG
EST: gi|208354863|gb|DC934367.1|DC934367
EST:     GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG                         GTGCTACTCAGAACACCATCAGGATTGCCCAG
genomic: GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAGgtaaagctca ... atgactacagGTGCTACTCAGAACACCATCAGGATTGCCCAG
EST: gi|162227966|gb|FC404586.1|FC404586
EST:     GTACAAGGAACTGTCTGCCAATCCCGATGTAGAGTACATTGCAGGAG                         GTGCTACTCAGAACACCATCAGGATTGCCCAG
genomic: GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAGgtaaagctca ... atgactacagGTGCTACTCAGAACACCATCAGGATTGCCCAG
EST: gi|208386871|gb|DC941575.1|DC941575
EST:     GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG                         GTGCTACTCAGAACACCATCAGGATTGCCCAG
genomic: GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAGgtaaagctca ... atgactacagGTGCTACTCAGAACACCATCAGGATTGCCCAG
EST: gi|100377120|gb|BY968373.1|BY968373
EST:     GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG                         GTGCTACTCAGAACACCATCAGGATTGCCCAG
genomic: GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAGgtaaagctca ... atgactacagGTGCTACTCAGAACACCATCAGGATTGCCCAG
EST: gi|208356999|gb|DC930029.1|DC930029
EST:     GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG                         GTGCTACTCAGAACACCATCAGGATTGCCCAG
genomic: GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAGgtaaagctca ... atgactacagGTGCTACTCAGAACACCATCAGGATTGCCCAG
EST: gi|162184644|gb|FC360842.1|FC360842
EST:     GTACAAGGAACTGTCTGCCAATCCCGATGTAGAGTACATTGCAGGAG                         GTGCTACTCAGAACACCATCAGGATTGCCCAG
genomic: GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAGgtaaagctca ... atgactacagGTGCTACTCAGAACACCATCAGGATTGCCCAG
EST: gi|18361231|gb|BJ193296.1|BJ193296
EST:     GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG                         GTGCTACTCAGAACACCATCAGGATTGCCCAG
genomic: GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAGgtaaagctca ... atgactacagGTGCTACTCAGAACACCATCAGGATTGCCCAG
EST: gi|208379780|gb|DC911665.1|DC911665
EST:     GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG                         GTGCTACTCAGAACACCATCAGGATTGCCCAG
genomic: GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAGgtaaagctca ... atgactacagGTGCTACTCAGAACACCATCAGGATTGCCCAG
EST: gi|18373465|gb|BJ205043.1|BJ205043
EST:     GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG                         GTGCTACTCAGAACACCATCAGGATTGCCCAG
genomic: GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAGgtaaagctca ... atgactacagGTGCTACTCAGAACACCATCAGGATTGCCCAG
EST: gi|67718979|gb|BJ969238.1|BJ969238
EST:     GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG                         GTGCTACTCAGAACACCATCAGGATTGCCCAG
genomic: GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAGgtaaagctca ... atgactacagGTGCTACTCAGAACACCATCAGGATTGCCCAG
EST: gi|67703978|gb|BJ964211.1|BJ964211
EST:     GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG                         GTGCTACTCANAACACCATCA
genomic: GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAGgtaaagctca ... atgactacagGTGCTACTCAGAACACCATCA
EST: gi|67575908|gb|BJ948732.1|BJ948732
EST:     GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG                         GTGCTACTCAGAACACCATCAGGATTGCCCAG
genomic: GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAGgtaaagctca ... atgactacagGTGCTACTCAGAACACCATCAGGATTGCCCAG
EST: gi|18361452|gb|BJ193518.1|BJ193518
EST:     GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG                         GTGCTACTCAGAACACCATCAGGATTGCCCAG
genomic: GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAGgtaaagctca ... atgactacagGTGCTACTCAGAACACCATCAGGATTGCCCAG
EST: gi|208395695|gb|DC911816.1|DC911816
EST:     GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG                         GTGCTACTCAGAACACCATCAGGATTGCCCAG
genomic: GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAGgtaaagctca ... atgactacagGTGCTACTCAGAACACCATCAGGATTGCCCAG
EST: gi|100383558|gb|BY950342.1|BY950342
EST:     GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG                         GTGCTACTCAGAACACCATCAGGATTGCCCAG
genomic: GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAGgtaaagctca ... atgactacagGTGCTACTCAGAACACCATCAGGATTGCCCAG
EST: gi|208398364|gb|DC912321.1|DC912321
EST:     GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG                         GTGCTACTCAGAACACCATCAGGATTGCCCAG
genomic: GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAGgtaaagctca ... atgactacagGTGCTACTCAGAACACCATCAGGATTGCCCAG
EST: gi|208358332|gb|DC930717.1|DC930717
EST:     GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG                         GTGCTACTCAGAACACCATCAGGATTGCCCAG
genomic: GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAGgtaaagctca ... atgactacagGTGCTACTCAGAACACCATCAGGATTGCCCAG
EST: gi|162160598|gb|FC337173.1|FC337173
EST:     GTACAAGGAACTGTCTGCCAATCCCGATGTAGAGTACATTGCAGGAG                         GTGCTACTCAGAACACCATCAGGATTGCCCAG
genomic: GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAGgtaaagctca ... atgactacagGTGCTACTCAGAACACCATCAGGATTGCCCAG
EST: gi|18363048|gb|BJ195120.1|BJ195120
EST:     GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG                         GTGCTACTCAGAACACCATCAGGATTGCCCAG
genomic: GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAGgtaaagctca ... atgactacagGTGCTACTCAGAACACCATCAGGATTGCCCAG
EST: gi|67702174|gb|BJ962407.1|BJ962407
EST:     GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG                         GTGCTACTCAGAACACCATCAGGATTGCCCAG
genomic: GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAGgtaaagctca ... atgactacagGTGCTACTCAGAACACCATCAGGATTGCCCAG
EST: gi|208356504|gb|DC914338.1|DC914338
EST:     GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG                         GTGCTACTCAGAACACCATCAGGATTGCCCAG
genomic: GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAGgtaaagctca ... atgactacagGTGCTACTCAGAACACCATCAGGATTGCCCAG
EST: gi|100426438|gb|BY958898.1|BY958898
EST:     GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG                         GTGCTACTCAGAACACCATCAGGATTGCCCAG
genomic: GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAGgtaaagctca ... atgactacagGTGCTACTCAGAACACCATCAGGATTGCCCAG
EST: gi|208353472|gb|DC938707.1|DC938707
EST:     GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG                         GTGCTACTCAGAACACCATCAGGATTGCCCAG
genomic: GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAGgtaaagctca ... atgactacagGTGCTACTCAGAACACCATCAGGATTGCCCAG
EST: gi|208394056|gb|DC957137.1|DC957137
EST:     CATGTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG                         GTGCTACTCAGAACACCATCAGGATTGCCCAG
genomic: CATGTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAGgtaaagctca ... atgactacagGTGCTACTCAGAACACCATCAGGATTGCCCAG
EST: gi|100386323|gb|BY987990.1|BY987990
EST:     GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG                         GTGCTACTCAGAACACCATCAGGATTGCCCAG
genomic: GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAGgtaaagctca ... atgactacagGTGCTACTCAGAACACCATCAGGATTGCCCAG
EST: gi|18373978|gb|BJ205556.1|BJ205556
EST:     GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG                         GTGCTACTCAGAACACCATCAGGATTGCCCAG
genomic: GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAGgtaaagctca ... atgactacagGTGCTACTCAGAACACCATCAGGATTGCCCAG
EST: gi|208399501|gb|DC908498.1|DC908498
EST:     GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG                         GTGCTACTCTGAACACCATCAGGATTGCCCAG
genomic: GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAGgtaaagctca ... atgactacagGTGCTACTCAGAACACCATCAGGATTGCCCAG
EST: gi|208355282|gb|DC929771.1|DC929771
EST:     GTACAANGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG                         GTGCTACTCATAACACCATCAGGATTGCCCAG
genomic: GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAGgtaaagctca ... atgactacagGTGCTACTCAGAACACCATCAGGATTGCCCAG
EST: gi|100388054|gb|BY988527.1|BY988527
EST:     GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG                         GTGCTACTCAGAACACCATCAGGATTGCCCAG
genomic: GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAGgtaaagctca ... atgactacagGTGCTACTCAGAACACCATCAGGATTGCCCAG
EST: gi|208390491|gb|DC933748.1|DC933748
EST:     GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG                         GTGCTACTCAGAACACCATCAGGATTGCCCAG
genomic: GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAGgtaaagctca ... atgactacagGTGCTACTCAGAACACCATCAGGATTGCCCAG
EST: gi|100374167|gb|BY985695.1|BY985695
EST:     GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG                         GTGCTACTCAGAACACCATCAGGATTGCCCAG
genomic: GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAGgtaaagctca ... atgactacagGTGCTACTCAGAACACCATCAGGATTGCCCAG
EST: gi|100429892|gb|BY978141.1|BY978141
EST:     GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG                         GTGCTACTCAGAACACCATCAGGATTGCCCAG
genomic: GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAGgtaaagctca ... atgactacagGTGCTACTCAGAACACCATCAGGATTGCCCAG
EST: gi|100366155|gb|BY967307.1|BY967307
EST:     GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG                         GTGCTACTCAGAACACCATCAGGATTGCCCAG
genomic: GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAGgtaaagctca ... atgactacagGTGCTACTCAGAACACCATCAGGATTGCCCAG
EST: gi|208383873|gb|DC911527.1|DC911527
EST:     GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG                         GTGCTACTCAGAACACCATCAGGATTGCCCAG
genomic: GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAGgtaaagctca ... atgactacagGTGCTACTCAGAACACCATCAGGATTGCCCAG
EST: gi|208370618|gb|DC936134.1|DC936134
EST:     GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG                         GTGCTACTCAGAACACCATCAGGATTGCCCAG
genomic: GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAGgtaaagctca ... atgactacagGTGCTACTCAGAACACCATCAGGATTGCCCAG
EST: gi|100370755|gb|BY948500.1|BY948500
EST:     GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG                         GTGCTACTCAGAACACCATCAGGATTGCCCAG
genomic: GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAGgtaaagctca ... atgactacagGTGCTACTCAGAACACCATCAGGATTGCCCAG
EST: gi|67702385|gb|BJ962618.1|BJ962618
EST:     GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG                         GTGCTACTCAGAACACCATCAGGATTGCCCAG
genomic: GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAGgtaaagctca ... atgactacagGTGCTACTCAGAACACCATCAGGATTGCCCAG
EST: gi|208358299|gb|DC939411.1|DC939411
EST:     GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG                         GTGCTACTCAGAACACCATCAGGATTGCCCAG
genomic: GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAGgtaaagctca ... atgactacagGTGCTACTCAGAACACCATCAGGATTGCCCAG
EST: gi|100379883|gb|BY949992.1|BY949992
EST:     GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG                         GTGCTACTCAGAACACCATCAGGATTGCCCAG
genomic: GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAGgtaaagctca ... atgactacagGTGCTACTCAGAACACCATCAGGATTGCCCAG
EST: gi|208394240|gb|DC933908.1|DC933908
EST:     GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAG                         GTGCTACTCAGAACACCATCAGGATTGCCCAG
genomic: GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAGgtaaagctca ... atgactacagGTGCTACTCAGAACACCATCAGGATTGCCCAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 32 (downstream exon)
Score: 24

GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAGgtaaagctca ... atgactacagGTGCTACTCAGAACACCATCAGGATTGCCCAG




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTACAAGGAACTGGCTGCCAATCCCGATGTAGAGTACATTGCAGGAGgtaaagctcagataaatatctcccaatacgtcgtagcatacgtaggtgatagtgtgctgtctctgtagcgctctggtatttgatgctcacaattaacctgtggtctgcttgctatgactacag

- - AAGGAA