1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TTATTCATTGGATTACTGTAGGCCTCCAAAGATTCAGGACTTCGCTGAAAATTTGGGAGAGGTGCTCAGAGGTGATCGGATCGAGAATTCACCTTACCAGgtgtgtaactggtgccggcttgactacagcttggaacagtttcttcgatctgctacatggttaacttatgcttgttgacaaaacaaaaatgataaagaac...
species | Physcomitrella patens |
transcript | PP1S73_94V6.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: ATTTGGGAGAGGTGCTCAGAGGTGATCGGATCGAGAATTCACCTTACCAG TTTGAAATGATGAATGACAAGCTGTGCAGGATTCTCTGTAAGAAAGTTATCEST: gi|18359587|gb|BJ191648.1|BJ191648
genomic: ATTTGGGAGAGGTGCTCAGAGGTGATCGGATCGAGAATTCACCTTACCAGgtgtgtaact ... tttggggcagTTTGAAATGATGAATGACAAGCTGTGCAGGATTCTCTGTAAGAAAGTTATC
EST: ATTTGGGAGAGGTGCTCAGAGGTGATCGGATCGAGAATTCACCTTACCAG TTTGAAATGATGAATGACAAGCTGTGCAGGATTCTCTGTAAGAAAGTTATCEST: gi|18342920|gb|BJ174956.1|BJ174956
genomic: ATTTGGGAGAGGTGCTCAGAGGTGATCGGATCGAGAATTCACCTTACCAGgtgtgtaact ... tttggggcagTTTGAAATGATGAATGACAAGCTGTGCAGGATTCTCTGTAAGAAAGTTATC
EST: ATTTGGGAGAGGTGCTCAGAGGTGATCGGATCGAGAATTCACCTTACCAG TTTGAAATGATGAATGACAAGCTGTGCAGGATTCTCTGTAAGAAAGTTATCEST: gi|18348107|gb|BJ180154.1|BJ180154
genomic: ATTTGGGAGAGGTGCTCAGAGGTGATCGGATCGAGAATTCACCTTACCAGgtgtgtaact ... tttggggcagTTTGAAATGATGAATGACAAGCTGTGCAGGATTCTCTGTAAGAAAGTTATC
EST: ATTTGGGAGAGGTGCTCAGAGGTGATCGGATCGAGAATTCACCTTACCAG TTTGAAATGATGAATGACAAGCTGTGCAGGATTCTCTGTAAGAAAGTTATC
genomic: ATTTGGGAGAGGTGCTCAGAGGTGATCGGATCGAGAATTCACCTTACCAGgtgtgtaact ... tttggggcagTTTGAAATGATGAATGACAAGCTGTGCAGGATTCTCTGTAAGAAAGTTATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTATTCATTGGATTACTGTAGGCCTCCAAAGATTCAGGACTTCGCTGAAAATTTGGGAGAGGTGCTCAGAGGTGATCGGATCGAGAATTCACCTTACCAGgtgtgtaactggtgccggcttgactacagcttggaacagtttcttcgatctgctacatggttaacttatgcttgttgacaaaacaaaaatgataaagaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caaaacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ataaagaa