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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAACTTAAGCATGAGAATATCATAGAAATGCTCGATGCTTTTGAAAGTGACCAGGAGTTTTGTGTAGTGACCGAGATTgctcagctatgctcttctcctactgcttgttttgatcataatatattccctttacgataatcttgaaatttaattccgaagaaggccccggctggccctt...

Basic information

species Physcomitrella patens
transcript PP1S72_260V6.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S72_260V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: AT1G50240.2 (Arabidopsis thaliana), 5'ss of exon 3
---------CAACTTAAGCATGAGAATATCATAGAAATGCTCGATGCTTTTGAAAGTGACCAGGAGTTTTGTGTAGTGACCGAGATTgctcagctatgctcttctcctactgcttgtt-ttgatcataatatattccctttacgataatcttg--aaatttaattccgaagaaggccccggctggccctt------------
          | || ||||||||||||||||| |||||||||||  | |||||||  |  |  ||||| ||||| || || ||| |||| ||  ||    ||| ||  ||||    || | ||   |||  || |   ||    |  || | |  | | |||  |   |  |||   |    |||  |              
ATATTGCGGAAGCTCAAGCATGAGAATATCATTGAAATGCTCGACTCCTTTGAAAACGCACGAGAGTTCTGTGTCGTCACTGAGTTTGCCCAAgta----cttttctcactgtagattgtagaatctaaagtactgatttatgaagcatatagctagacttatatgaaataaagaatcaccatggaacacccaattttacag

upper sequence: PP1S72_260V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: EFJ37043 (Selaginella moellendorffii), 5'ss of exon 3
------------CAACTTAAGCATGAGAATATCATAGAAATGCTCGATGCTTTTGAAAGTGACCAGGAGTTTTGTGTAGTGACCGAGATTgctcagctatgctcttctcctactgcttgttttgatcataatatat----tccctttacgataatcttgaaattta-attccgaagaaggccccggctggccctt
            ||||| ||||| ||||| || ||||||||||| ||||| ||||||||    |||||||||||||| ||||| ||  |||| |||  | |     |   | ||  ||||||      || | | |    |  |||| | |   | | |  | | | |||   |  |  |  |   || |     
CAGATTTTGCGGCAACTAAAGCACGAGAACATTATAGAAATGCTGGATGCATTTGAAAGCCCACAGGAGTTTTGTGTCGTGACAGAATTTGCACAGgcaagtgtaacattttctttttgtttctggtgtattttttcatttttcttttctagtgtgtggttactcacatttttatcattgttctttctag-----

upper sequence: PP1S72_260V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: EFJ33693 (Selaginella moellendorffii), 5'ss of exon 3
---------CAACTTAAGCATGAGAATATCATAGAAATGCTCGATGCTTTTGAAAGTGACCAGGAGTTTTGTGTAGTGACCGAGATTgctcagctatgctcttctcctactgcttgttttgatcataatatat----tccctttacgataatcttgaaattta-attccgaagaaggccccggctggccctt
         ||||| ||||| ||||| || ||||||||||| ||||| ||||||||    |||||||||||||| ||||| ||  |||| |||  | |     |   | ||  ||||||  |   || | | |    |  |||| | |   | | |  | | | |||   |  |  |  |   || |     
ATTTTGCGGCAACTAAAGCACGAGAACATTATAGAAATGCTGGATGCATTTGAAAGCCCACAGGAGTTTTGTGTCGTGACAGAATTTGCACAGGCAAGTgtaacattttcttgttgtttctagtgtattttttcatttttcttttctagtgtgtggttactcacatttttatcattgttctttctag-----