1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TTGGAATGGGAATTGCCAACGCCGTCGGTTTGGCTTTGGCTGAATCTAATTTGGCCGCCCGTTTCAACAAGCCTGACGCAAAGATCGTTGACCACTACACgtaattatccatttccaatctttcttttccctgtgcgcaatgagctttcaagatacaaggtgcatttttcgcaatccaggtggtctgagatggtcatact...
species | Physcomitrella patens |
transcript | PP1S72_25V6.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TTGGCCGCCCGTTTCAACAAGCCTGACGCAAAGATCGTTGACCACTACAC ATACTGTATCCTTGGAGACGGTTGCAACATGGAAGGTATCTCCAACGAGGCEST: gi|162186385|gb|FC362941.1|FC362941
genomic: TTGGCCGCCCGTTTCAACAAGCCTGACGCAAAGATCGTTGACCACTACACgtaattatcc ... tgacacgcagATACTGTATCCTTGGAGACGGTTGCAACATGGAAGGTATCTCCAACGAGGC
EST: CAACAAGCCTGACGCAAAGATCGTTGACCACTACAC ATACTGTATCCTTGGAGACGGTTGCAACATGGAAGGTATCTCCAACGAGGCEST: gi|67716179|gb|BJ966439.1|BJ966439
genomic: CAACAAGCCTGACGCAAAGATCGTTGACCACTACACgtaattatcc ... tgacacgcagATACTGTATCCTTGGAGACGGTTGCAACATGGAAGGTATCTCCAACGAGGC
EST: TTGGCCGCCCGTTTCAACAAGCCTGACGCAAAGATCGTTGACCACTACAC ATACTGTATCCTTGGAGACGGTTGCAACATGGAAGGTATCTCCAACGAGGCEST: gi|162254948|gb|FC431133.1|FC431133
genomic: TTGGCCGCCCGTTTCAACAAGCCTGACGCAAAGATCGTTGACCACTACACgtaattatcc ... tgacacgcagATACTGTATCCTTGGAGACGGTTGCAACATGGAAGGTATCTCCAACGAGGC
EST: TTGGCCGCCCGTTTCAACAAGCCTGACGCAAAGATCGTTGACCACTACAC ATACTGTATCCTTGGAGACGGTTGCAACATGGAAGGTATCTCCAACGAGGCEST: gi|162255769|gb|FC431429.1|FC431429
genomic: TTGGCCGCCCGTTTCAACAAGCCTGACGCAAAGATCGTTGACCACTACACgtaattatcc ... tgacacgcagATACTGTATCCTTGGAGACGGTTGCAACATGGAAGGTATCTCCAACGAGGC
EST: TTGGCCGCCCGTTTCAACAAGCCTGACGCAAAGATCGTTGACCACTACAC ATACTGTATCCTTGGAGACGGTTGCAACATGGAAGGTATCTCCAACGAGGC
genomic: TTGGCCGCCCGTTTCAACAAGCCTGACGCAAAGATCGTTGACCACTACACgtaattatcc ... tgacacgcagATACTGTATCCTTGGAGACGGTTGCAACATGGAAGGTATCTCCAACGAGGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGGAATGGGAATTGCCAACGCCGTCGGTTTGGCTTTGGCTGAATCTAATTTGGCCGCCCGTTTCAACAAGCCTGACGCAAAGATCGTTGACCACTACACgtaattatccatttccaatctttcttttccctgtgcgcaatgagctttcaagatacaaggtgcatttttcgcaatccaggtggtctgagatggtcatact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG