1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GATTGGATTCAGCATGATCACTGACGCAGAGAGCAAGGGTGCGATTACTCCAGGAAAGgtttgtgtttcagcgaaatcttgatccttgtatattttgaatttttgtagagaatacttcctagtcgtgggcaacttggaagtattttactgaattctggaacaaaagtatcttcagataatttggaaccttaacatctcataatttttttcataaatag
species | Physcomitrella patens |
transcript | PP1S71_187V6.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TCAGCATGATCACTGACGCAGAGAGCAAGGGTGCGATTACTCCAGGAAAG AGCATCCTTGTGGAGCCGACCAGTGGCAACACCGGCATTGGCTTGGCTTTCEST: gi|100385278|gb|BY950870.1|BY950870
genomic: TCAGCATGATCACTGACGCAGAGAGCAAGGGTGCGATTACTCCAGGAAAGgtttgtgttt ... tcataaatagAGCATCCTTGTGGAGCCGACCAGTGGCAACACCGGCATTGGCTTGGCTTTC
EST: TCAGCATGATCACTGACGCAGAGAGCAAGGGTGCGATTACTCCAGGAAAG AGCATCCTTGTGGAGCCGACCAGTGGCAACACCGGCATTGGCTTGGCTTTCEST: gi|100409032|gb|BY991846.1|BY991846
genomic: TCAGCATGATCACTGACGCAGAGAGCAAGGGTGCGATTACTCCAGGAAAGgtttgtgttt ... tcataaatagAGCATCCTTGTGGAGCCGACCAGTGGCAACACCGGCATTGGCTTGGCTTTC
EST: TCAGCATGATCACTGACGCAGAGAGCAAGGGTGCGATTACTCCAGGAAAG AGCATCCTTGTGGAGCCGACCAGTGGCAACACCGGCATTGGCTTGGCTTTCEST: gi|162171775|gb|FC348951.1|FC348951
genomic: TCAGCATGATCACTGACGCAGAGAGCAAGGGTGCGATTACTCCAGGAAAGgtttgtgttt ... tcataaatagAGCATCCTTGTGGAGCCGACCAGTGGCAACACCGGCATTGGCTTGGCTTTC
EST: TCAGCATGATCACTGACGCAGAGAGCAAGGGTGCGATTACTCCAGGAAAG AGCATCCTTGTGGAGCCGACCAGTGGCAACACCGGCATTGGCTTGGCTTTCEST: gi|162184261|gb|FC359683.1|FC359683
genomic: TCAGCATGATCACTGACGCAGAGAGCAAGGGTGCGATTACTCCAGGAAAGgtttgtgttt ... tcataaatagAGCATCCTTGTGGAGCCGACCAGTGGCAACACCGGCATTGGCTTGGCTTTC
EST: TCAGCATGATCACTGACGCAGAGAGCAAGGGTGCGATTACTCCAGGAAAG AGCATCCTTGTGGAGCCGACCAGTGGCAACACCGGCATTGGCTTGGCTTTCEST: gi|100363590|gb|BY966464.1|BY966464
genomic: TCAGCATGATCACTGACGCAGAGAGCAAGGGTGCGATTACTCCAGGAAAGgtttgtgttt ... tcataaatagAGCATCCTTGTGGAGCCGACCAGTGGCAACACCGGCATTGGCTTGGCTTTC
EST: TCAGCATGATCACTGACGCAGAGAGCAAGGGTGCGATTACTCCAGGAAAG AGCATCCTTGTGGAGCCGACCAGTGGCAACACCGGCATTGGCTTGGCTTTCEST: gi|208349485|gb|DC905623.1|DC905623
genomic: TCAGCATGATCACTGACGCAGAGAGCAAGGGTGCGATTACTCCAGGAAAGgtttgtgttt ... tcataaatagAGCATCCTTGTGGAGCCGACCAGTGGCAACACCGGCATTGGCTTGGCTTTC
EST: TCAGCATGATCACTGACGCAGAGAGCAAGGGTGCGATTACTCCAGGAAAG AGCATCCTTGTGGAGCCGACCAGTGGCAACACCGGCATTGGCTTGGCTTTC
genomic: TCAGCATGATCACTGACGCAGAGAGCAAGGGTGCGATTACTCCAGGAAAGgtttgtgttt ... tcataaatagAGCATCCTTGTGGAGCCGACCAGTGGCAACACCGGCATTGGCTTGGCTTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATTGGATTCAGCATGATCACTGACGCAGAGAGCAAGGGTGCGATTACTCCAGGAAAGgtttgtgtttcagcgaaatcttgatccttgtatattttgaatttttgtagagaatacttcctagtcgtgggcaacttggaagtattttactgaattctggaacaaaagtatcttcagataatttggaaccttaacatctcataatttttttcataaatag
- - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - AGCAAG