1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GCAATCCTTGGACGTGTTGCGCATGGCCAAGAAGTTCGCACCCCCGGGCACTCTTACTAAAACATCAATTATGCTCGGCTGTGGAGAGACTCCTGCACAGgtattttcgtccacatggattatcctatttgacttttctcggtaagcaaggtagattgctattttatctcgtagtgatgtttggagccactgtgtcatggatcactcatgtgtgtgactataacgttagtgaatgttcccgagttcttcgtaataacgaattgattttgtcattccag
species | Physcomitrella patens |
transcript | PP1S70_295V6.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CTCTTACTAAAACATCAATTATGCTCGGCTGTGGAGAGACTCCTGCACAG GTGGTAAAAGCAATGAAGAGTGTGCGGGCGGCAGGTGTGGATGTGATGACAEST: gi|162169984|gb|FC345924.1|FC345924
genomic: CTCTTACTAAAACATCAATTATGCTCGGCTGTGGAGAGACTCCTGCACAGgtattttcgt ... gtcattccagGTGGTAAAAGCAATGAAGAGTGTGCGGGCGGCAGGTGTGGATGTGATGACA
EST: CTCTTACTAAAACATCAATTATGCTCGGCTGTGGAGAGACTCCTGCACAG GTGGTAAAAGCAATGAAGAGTGTGCGGGCGGCAGGTGTGGATGTGATGACAEST: gi|162182326|gb|FC357197.1|FC357197
genomic: CTCTTACTAAAACATCAATTATGCTCGGCTGTGGAGAGACTCCTGCACAGgtattttcgt ... gtcattccagGTGGTAAAAGCAATGAAGAGTGTGCGGGCGGCAGGTGTGGATGTGATGACA
EST: CTCTTACTAAAACATCAATTATGCTCGGCTGTGGAGAGACTCCTGCACAG GTGGTAAAAGCAATGAAGAGTGTGCGGGCGGCAGGTGTGGATGTGATGACAEST: gi|37835633|gb|BJ593645.1|BJ593645
genomic: CTCTTACTAAAACATCAATTATGCTCGGCTGTGGAGAGACTCCTGCACAGgtattttcgt ... gtcattccagGTGGTAAAAGCAATGAAGAGTGTGCGGGCGGCAGGTGTGGATGTGATGACA
EST: CTCTTACTAAAACATCAATTATGCTCGGCTGTGGAGAGACTCCTGCACAG GTGGTAAAAGCAATGAAGAGTGTGCGGGCGGCAGGTGTGGATGTGATGACAEST: gi|67724466|gb|BJ974725.1|BJ974725
genomic: CTCTTACTAAAACATCAATTATGCTCGGCTGTGGAGAGACTCCTGCACAGgtattttcgt ... gtcattccagGTGGTAAAAGCAATGAAGAGTGTGCGGGCGGCAGGTGTGGATGTGATGACA
EST: CTCTTACTAAAACATCAATTATGCTCGGCTGTGGAGAGACTCCTGCACAG GTGGTAAAAGCAATGAAGAGTGTGCGGGCGGCAGGTGTGGATGTGATGACAEST: gi|67727985|gb|BJ978244.1|BJ978244
genomic: CTCTTACTAAAACATCAATTATGCTCGGCTGTGGAGAGACTCCTGCACAGgtattttcgt ... gtcattccagGTGGTAAAAGCAATGAAGAGTGTGCGGGCGGCAGGTGTGGATGTGATGACA
EST: CTCTTACTAAAACATCAATTATGCTCGGCTGTGGAGAGACTCCTGCACAG GTGGTAAAAGCAATGAAGAGTGTGCGGGCGGCAGGTGTGGATGTGATGACAEST: gi|162163284|gb|FC339402.1|FC339402
genomic: CTCTTACTAAAACATCAATTATGCTCGGCTGTGGAGAGACTCCTGCACAGgtattttcgt ... gtcattccagGTGGTAAAAGCAATGAAGAGTGTGCGGGCGGCAGGTGTGGATGTGATGACA
EST: CTCTTACTAAAACATCAATTATGCTCGGCTGTGGAGAGACTCCTGCACAG GTGGTAAAAGCAATGAAGAGTGTGCGGGCGGCAGGTGTGGATGTGATGACAEST: gi|7047031|gb|AW476925.1|AW476925
genomic: CTCTTACTAAAACATCAATTATGCTCGGCTGTGGAGAGACTCCTGCACAGgtattttcgt ... gtcattccagGTGGTAAAAGCAATGAAGAGTGTGCGGGCGGCAGGTGTGGATGTGATGACA
EST: CTCTTACTAAAACATCAATTATGCTCGGCTGTGGAGAGACTCCTGCACAG GTGGTAAAAGCAATGAAGAGTGTGCGGGCGGCAGGTGTGGATGTGATGACAEST: gi|162163283|gb|FC339401.1|FC339401
genomic: CTCTTACTAAAACATCAATTATGCTCGGCTGTGGAGAGACTCCTGCACAGgtattttcgt ... gtcattccagGTGGTAAAAGCAATGAAGAGTGTGCGGGCGGCAGGTGTGGATGTGATGACA
EST: CTCTTACTAAAACATCAATTATGCTCGGCTGTGGAGAGACTCCTGCACAG GTGGTAAAAGCAATGAAGAGTGTGCGGGCGGCAGGTGTGGATGTGATGACAEST: gi|18338605|gb|BJ170629.1|BJ170629
genomic: CTCTTACTAAAACATCAATTATGCTCGGCTGTGGAGAGACTCCTGCACAGgtattttcgt ... gtcattccagGTGGTAAAAGCAATGAAGAGTGTGCGGGCGGCAGGTGTGGATGTGATGACA
EST: AAAACATCAATTATGCTCGGCTGTGGAGAGACTCCTGCACAG GTGGTAAAAGCAATGAAGAGTGTGCGGGCGGCAGGTGTGGATGTGATGACAEST: gi|18332517|gb|BJ164530.1|BJ164530
genomic: AAAACATCAATTATGCTCGGCTGTGGAGAGACTCCTGCACAGgtattttcgt ... gtcattccagGTGGTAAAAGCAATGAAGAGTGTGCGGGCGGCAGGTGTGGATGTGATGACA
EST: AGAGACTCCTGCACAG GTGGTAAAAGCAATGAAGAGTGTGCGGGCGGCAGGTGTGGATGTGATGACA
genomic: AGAGACTCCTGCACAGgtattttcgt ... gtcattccagGTGGTAAAAGCAATGAAGAGTGTGCGGGCGGCAGGTGTGGATGTGATGACA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCAATCCTTGGACGTGTTGCGCATGGCCAAGAAGTTCGCACCCCCGGGCACTCTTACTAAAACATCAATTATGCTCGGCTGTGGAGAGACTCCTGCACAGgtattttcgtccacatggattatcctatttgacttttctcggtaagcaaggtagattgctattttatctcgtagtgatgtttggagccactgtgtcatggatcactcatgtgtgtgactataacgttagtgaatgttcccgagttcttcgtaataacgaattgattttgtcattccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA