1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GCGATTGACCTTCTGTGTGGAAGGTAATATCAGCGTCGGCAAGTCTACATTCCTGCAGAGAATAGCAAGTGAAACTCTTGAGCTGCAAGATCTTGTTGAGgtatagtttttccctctttcaataactgaaatctgttcttcagcggcactttctagtgaaatcttttctttcatgtccatgatatttcacttcctgtgggggataacactgatttatgtcgtcatcatgtacctgaatctgggtttttcatacag
species | Physcomitrella patens |
transcript | PP1S70_117V6.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CTGCAGAGAATAGNCA-GTGAAACTCTTGAGCTGNCA-GATCTTGTTGAG ATCGTGCCCGAACCTGTTGGGAAATGGEST: gi|100441503|gb|BY980925.1|BY980925
genomic: CTGCAGAGAATAG-CAAGTGAAACTCTTGAGCTG-CAAGATCTTGTTGAGgtatagtttt ... tttcatacagATCGTGCCCGAACCTGTTGGGAAATGG
EST: TGCAGANGA-TAGNCA-GTGAAACTCTTGAGCTNGCA-GATCTTGTTGAG ATCGTGCCCGAACCTGTTGGGAAATGGCAAGATGTCGGTGCCAACCATCACEST: gi|162150262|gb|FC326347.1|FC326347
genomic: TGCAGA-GAATAG-CAAGTGAAACTCTTGAGCT-GCAAGATCTTGTTGAGgtatagtttt ... tttcatacagATCGTGCCCGAACCTGTTGGGAAATGGCAAGATGTCGGTGCCAACCATCAC
EST: TCCTGCAGAGAATAGCAAGTGAAACTCTTGAGCTGCAAGATCTTGTTGAG ATCGTGCCCGAACCTGTTGGGAAATGGCAAGATGTCGGTGCCAACCATCAC
genomic: TCCTGCAGAGAATAGCAAGTGAAACTCTTGAGCTGCAAGATCTTGTTGAGgtatagtttt ... tttcatacagATCGTGCCCGAACCTGTTGGGAAATGGCAAGATGTCGGTGCCAACCATCAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCGATTGACCTTCTGTGTGGAAGGTAATATCAGCGTCGGCAAGTCTACATTCCTGCAGAGAATAGCAAGTGAAACTCTTGAGCTGCAAGATCTTGTTGAGgtatagtttttccctctttcaataactgaaatctgttcttcagcggcactttctagtgaaatcttttctttcatgtccatgatatttcacttcctgtgggggataacactgatttatgtcgtcatcatgtacctgaatctgggtttttcatacag
- - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA