1 5' 3' | 2 5' 3' | 3 5' 3' |
AACCTTTATGGACGTTGCTATTGATCGTCACCATCACACTGAGGACGAACAAACGGATGCTGTTGAGCCAACCTCTCCAGTTGTGAACTGCATGGGACAGgttggtagctcttaaagctggctgtgtcttagtctcccgactactctcgtagcgtgttgtgtttctgtatagtacttgaagtttccggatgttggctattgctgggtgcttaattgtgtcgtgatatacag
species | Physcomitrella patens |
transcript | PP1S6_474V6.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TGTGAACTGCATGGGACAG GTAAAATCAAAGAAAACGCTAAAACAGTGTAGAAGAAGTGAGGCGGCGAGGEST: gi|37844805|gb|BJ602813.1|BJ602813
genomic: TGTGAACTGCATGGGACAGgttggtagct ... tgatatacagGTAAAATCAAAGAAAACGCTAAAACAGTGTAGAAGAAGTGAGGCGGCGAGG
EST: GTGAACTGCATGGGACAG GTAAAATCAAAGAAAACGNTAAAACAGTGTAGAAGAAGTGAGGCGGCGAGG
genomic: GTGAACTGCATGGGACAGgttggtagct ... tgatatacagGTAAAATCAAAGAAAACGCTAAAACAGTGTAGAAGAAGTGAGGCGGCGAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AACCTTTATGGACGTTGCTATTGATCGTCACCATCACACTGAGGACGAACAAACGGATGCTGTTGAGCCAACCTCTCCAGTTGTGAACTGCATGGGACAGgttggtagctcttaaagctggctgtgtcttagtctcccgactactctcgtagcgtgttgtgtttctgtatagtacttgaagtttccggatgttggctattgctgggtgcttaattgtgtcgtgatatacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT