1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CTCAAGGAGCTAAAAGCTGAGCTTGCTGCTCTGAGAGTCGCAAAGGTCACTGGAGGCGCTCCTAACAAGCTGTCTAAGATgtacgcttctctcgtcctcccttggttgattgtattgctgtgaaatattcttcatggccggttgtgttaacttgagcgtctaattctcagcctgaaaaat...
species | Physcomitrella patens |
transcript | PP1S6_426V6.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CTGAGAGTCGCAAAGGTCACTGGAGGCGCTCCTAACAAGCTGTCTAAGAT CAAGGTGGTTAGGCTGTCGATCGCACAGGTTTTAACTGTCATTTCTCAGACEST: gi|67573032|gb|BJ945856.1|BJ945856
genomic: CTGAGAGTCGCAAAGGTCACTGGAGGCGCTCCTAACAAGCTGTCTAAGATgtacgcttct ... ggttgtgcagCAAGGTGGTTAGGCTGTCGATCGCACAGGTTTTAACTGTCATTTCTCAGAC
EST: CTGAGAGTCGCAAAGGTCACTGGAGGCGCTCCTAACAAGCTGTCTAAGAT CAAGGTGGTTAGGCTGTCGATCGCACAGGTTTTAACTGTCATTTCTCAGACEST: gi|162211267|gb|FC386979.1|FC386979
genomic: CTGAGAGTCGCAAAGGTCACTGGAGGCGCTCCTAACAAGCTGTCTAAGATgtacgcttct ... ggttgtgcagCAAGGTGGTTAGGCTGTCGATCGCACAGGTTTTAACTGTCATTTCTCAGAC
EST: CTGAGAGTCGCAAAGGTCACTGGAGGCGCTCCTAACAAGCTGTCTAAGAT CAAGGTGGTTAGGCTGTCGATCGCACAGGTTTTAACTGTCATTTCTCAGACEST: gi|162253215|gb|FC429151.1|FC429151
genomic: CTGAGAGTCGCAAAGGTCACTGGAGGCGCTCCTAACAAGCTGTCTAAGATgtacgcttct ... ggttgtgcagCAAGGTGGTTAGGCTGTCGATCGCACAGGTTTTAACTGTCATTTCTCAGAC
EST: CTGAGAGTCGCAAAGGTCACTGGAGGCGCTCCTAACAAGCTGTCTAAGAT CAAGGTGGTTAGGCTGTCGATCGCACAGGTTTTAACTGTCATTTCTCAGACEST: gi|162251775|gb|FC427507.1|FC427507
genomic: CTGAGAGTCGCAAAGGTCACTGGAGGCGCTCCTAACAAGCTGTCTAAGATgtacgcttct ... ggttgtgcagCAAGGTGGTTAGGCTGTCGATCGCACAGGTTTTAACTGTCATTTCTCAGAC
EST: CTGAGAGTCGCAAAGGTCACTGGAGGCGCTCCTAACAAGCTGTCTAAGAT CAAGGTGGTTAGGCTGTCGATCGCACAGGTTTTAACTGTCATTTCTCAGACEST: gi|162229976|gb|FC407338.1|FC407338
genomic: CTGAGAGTCGCAAAGGTCACTGGAGGCGCTCCTAACAAGCTGTCTAAGATgtacgcttct ... ggttgtgcagCAAGGTGGTTAGGCTGTCGATCGCACAGGTTTTAACTGTCATTTCTCAGAC
EST: CTGAGAGTCGCAAAGGTCACTGGAGGCGCTCCTAACAAGCTGTCTAAGAT CAAGGTGGTTAGGCTGTCGATCGCACAGGTTTTAACTGTCATTTCTCAGACEST: gi|162229975|gb|FC407337.1|FC407337
genomic: CTGAGAGTCGCAAAGGTCACTGGAGGCGCTCCTAACAAGCTGTCTAAGATgtacgcttct ... ggttgtgcagCAAGGTGGTTAGGCTGTCGATCGCACAGGTTTTAACTGTCATTTCTCAGAC
EST: CTGAGAGTCGCAAAGGTCACTGGAGGCGCTCCTAACAAGCTGTCTAAGAT CAAGGTGGTTAGGCTGTCGATCGCACAGGTTTTAACTGTCATTTCTCAGACEST: gi|18327219|gb|BJ159221.1|BJ159221
genomic: CTGAGAGTCGCAAAGGTCACTGGAGGCGCTCCTAACAAGCTGTCTAAGATgtacgcttct ... ggttgtgcagCAAGGTGGTTAGGCTGTCGATCGCACAGGTTTTAACTGTCATTTCTCAGAC
EST: CTGAGAGTCGCAAAGGTCACTGGAGGCGCTCCTAACAAGCTGTCTAAGAT CAAGGTGGTTAGGCTGTCGATCGCACAGGTTTTAACTGTCATTTCTCAGACEST: gi|18335495|gb|BJ167515.1|BJ167515
genomic: CTGAGAGTCGCAAAGGTCACTGGAGGCGCTCCTAACAAGCTGTCTAAGATgtacgcttct ... ggttgtgcagCAAGGTGGTTAGGCTGTCGATCGCACAGGTTTTAACTGTCATTTCTCAGAC
EST: CTGAGAGTCGCAAAGGTCACTGGAGGCGCTCCTAACAAGCTGTCTAAGAT CAAGGTGGTTAGGCTGTCGATCGCACAGGTTTTAACTGTCATTTCTCAGACEST: gi|162211268|gb|FC386980.1|FC386980
genomic: CTGAGAGTCGCAAAGGTCACTGGAGGCGCTCCTAACAAGCTGTCTAAGATgtacgcttct ... ggttgtgcagCAAGGTGGTTAGGCTGTCGATCGCACAGGTTTTAACTGTCATTTCTCAGAC
EST: CTGAGAGTCGCAAAGGTCACTGGAGGCGCTCCTAACAAGCTGTCTAAGAT CAAGGTGGTTAGGCTGTCGATCGCACAGGTTTTAACTGTCATTTCTCAGACEST: gi|162227403|gb|FC403137.1|FC403137
genomic: CTGAGAGTCGCAAAGGTCACTGGAGGCGCTCCTAACAAGCTGTCTAAGATgtacgcttct ... ggttgtgcagCAAGGTGGTTAGGCTGTCGATCGCACAGGTTTTAACTGTCATTTCTCAGAC
EST: CTGAGAGTCGCAAAGGTCACTGGAGGCGCTCCTAACAAGCTGTCTAAGAT CAAGGTGGTTAGGCTGTCGATCGCACAGGTTTTAACTGTCATTTCTCAGACEST: gi|67696412|gb|BJ956645.1|BJ956645
genomic: CTGAGAGTCGCAAAGGTCACTGGAGGCGCTCCTAACAAGCTGTCTAAGATgtacgcttct ... ggttgtgcagCAAGGTGGTTAGGCTGTCGATCGCACAGGTTTTAACTGTCATTTCTCAGAC
EST: CTGAGAGTCGCAAAGGTCACTGGAGGCGCTCCTAACAAGCTGTCTAAGAT CAAGGTGGTTAGGCTGTCGATCGCACAGGTTTTAACTGTCATTTCTCAGAC
genomic: CTGAGAGTCGCAAAGGTCACTGGAGGCGCTCCTAACAAGCTGTCTAAGATgtacgcttct ... ggttgtgcagCAAGGTGGTTAGGCTGTCGATCGCACAGGTTTTAACTGTCATTTCTCAGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTCAAGGAGCTAAAAGCTGAGCTTGCTGCTCTGAGAGTCGCAAAGGTCACTGGAGGCGCTCCTAACAAGCTGTCTAAGATgtacgcttctctcgtcctcccttggttgattgtattgctgtgaaatattcttcatggccggttgtgttaacttgagcgtctaattctcagcctgaaaaat
- - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG