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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCTGAACCTGGCCAAGACTATCTCCATACACTTCCCCAATGGCAAGGATAATCTTCTCAACTTCGAAATCACCATCCGACCAGACGAGGGCTATTATCAgtaagtctttggatcgcttttggaactatttgcatgttgtctcctgatcctgcgaagcatcgcctacatgtctcagccgtcctggattttcacaagattt...

Basic information

species Physcomitrella patens
transcript PP1S6_291V6.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15319941|gb|BI487265.1|BI487265
EST:     AATCTTCTCAACTTCGAAATCACCATCCGACCAGACGAGGGCTATTATCA                         AGGTGGTACATTTGTCTTTAGTTTCTCAATCTCACAGGTGTACCCTCACGA
genomic: AATCTTCTCAACTTCGAAATCACCATCCGACCAGACGAGGGCTATTATCAgtaagtcttt ... gttcctgcagAGGTGGTACATTTGTCTTTAGTTTCTCAATCTCACAGGTGTACCCTCACGA
EST: gi|162271024|gb|FC447429.1|FC447429
EST:     AATCTTCTCAACTTCGAAATCACCATCCGACCAGACGAGGGCTATTATCA                         AGGTGGTACATTTGTCTTTAGTTTCTCAATCTCACAGGTGTACCCTCACGA
genomic: AATCTTCTCAACTTCGAAATCACCATCCGACCAGACGAGGGCTATTATCAgtaagtcttt ... gttcctgcagAGGTGGTACATTTGTCTTTAGTTTCTCAATCTCACAGGTGTACCCTCACGA