1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TCTCCTGAAAGATTAGCCAATTATGAGACGAAAATCAAAAACTTTTATGAAGAGCACATGCATACGGACGAAGAGATTCGTTACTGTCTGGATGGAAGTGgtaagcatcttaaatcaacgtctttgctactttatttgcacaacatgccttatgcgactctgatgggctaggatcgattcttcctacataaacacacacttgcattgcagttgttgatgcagttgttttacag
species | Physcomitrella patens |
transcript | PP1S69_28V6.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AGAGCACATGCATACGGACGAAGAGATTCGTTACTGTCTGGATGGAAGTG GTTACTTTGATATTCGCGACCCAGAAGACCGTTGGATTCGAATATGGGTGAEST: gi|100407256|gb|BY974081.1|BY974081
genomic: AGAGCACATGCATACGGACGAAGAGATTCGTTACTGTCTGGATGGAAGTGgtaagcatct ... tgttttacagGTTACTTTGATATTCGCGACCCAGAAGACCGTTGGATTCGAATATGGGTGA
EST: AGAGCACATGCATACGGACGAAGAGATTCGTTACTGTCTGGATGGAAGTG GTTACTTTGATATTCGCGACCCAGAAGACCGTTGGATTCGAATATGGGTGAEST: gi|162263751|gb|FC440157.1|FC440157
genomic: AGAGCACATGCATACGGACGAAGAGATTCGTTACTGTCTGGATGGAAGTGgtaagcatct ... tgttttacagGTTACTTTGATATTCGCGACCCAGAAGACCGTTGGATTCGAATATGGGTGA
EST: AGAGCACATGCATACGGACGAAGAGATTCGTTACTGTCTGGATGGAAGTG GTTACTTTGATATTCGCGACCCAGAAGACCGTTGGATTCGAATATGGGTGAEST: gi|162233761|gb|FC410027.1|FC410027
genomic: AGAGCACATGCATACGGACGAAGAGATTCGTTACTGTCTGGATGGAAGTGgtaagcatct ... tgttttacagGTTACTTTGATATTCGCGACCCAGAAGACCGTTGGATTCGAATATGGGTGA
EST: AGAGCACATGCATACGGACGAAGAGATTCGTTACTGTCTGGATGGAAGTG GTTACTTTGATATTCGCGACCCAGAAGACCGTTGGATTCGAATATGGGTGAEST: gi|162187912|gb|FC364486.1|FC364486
genomic: AGAGCACATGCATACGGACGAAGAGATTCGTTACTGTCTGGATGGAAGTGgtaagcatct ... tgttttacagGTTACTTTGATATTCGCGACCCAGAAGACCGTTGGATTCGAATATGGGTGA
EST: AGAGCACATGCATACGGACGAAGAGATTCGTTACTGTCTGGATGGAAGTG GTTACTTTGATATTCGCGACCCAGAAGACCGTTGGATTCGAATATGGGTGAEST: gi|162233762|gb|FC410028.1|FC410028
genomic: AGAGCACATGCATACGGACGAAGAGATTCGTTACTGTCTGGATGGAAGTGgtaagcatct ... tgttttacagGTTACTTTGATATTCGCGACCCAGAAGACCGTTGGATTCGAATATGGGTGA
EST: AGAGCACATGCATACGGACGAAGAGATTCGTTACTGTCTGGATGGAAGTG GTTACTTTGATATTCGCGACCCAGAAGACCGTTGGATTCGAATATGGGTGAEST: gi|208364633|gb|DC935418.1|DC935418
genomic: AGAGCACATGCATACGGACGAAGAGATTCGTTACTGTCTGGATGGAAGTGgtaagcatct ... tgttttacagGTTACTTTGATATTCGCGACCCAGAAGACCGTTGGATTCGAATATGGGTGA
EST: ANAGCACATGCATACGGACGAANANATTCNTTACTGTCTGGATGGAANTG GTTACTTTGATATTCNCGACCCANAANACCGTTGGATTCNAATATGGEST: gi|100383677|gb|BY969206.1|BY969206
genomic: AGAGCACATGCATACGGACGAAGAGATTCGTTACTGTCTGGATGGAAGTGgtaagcatct ... tgttttacagGTTACTTTGATATTCGCGACCCAGAAGACCGTTGGATTCGAATATGG
EST: AGAGCACATGCATACGGACGAAGAGATTCGTTACTGTCTGGATGGAAGTG GTTACTTTGATATTCGCGACCCAGAAGACCGTTTNATTTCTAATATGCGTGEST: gi|208378344|gb|DC923015.1|DC923015
genomic: AGAGCACATGCATACGGACGAAGAGATTCGTTACTGTCTGGATGGAAGTGgtaagcatct ... tgttttacagGTTACTTTGATATTCGCGACCCAGAAGACCGTTGGATT-CGAATATGGGTG
EST: AGAGCACATGCATACGGACGAAGAGATTCGTTACTGTCTGGATGGAAGTG GTTACTTTGATATTCGCGACCCAGAAGACCGTTGGATTCGAATATGGGTGAEST: gi|100388684|gb|BY970832.1|BY970832
genomic: AGAGCACATGCATACGGACGAAGAGATTCGTTACTGTCTGGATGGAAGTGgtaagcatct ... tgttttacagGTTACTTTGATATTCGCGACCCAGAAGACCGTTGGATTCGAATATGGGTGA
EST: AGAGCACATGCATACGGACGAAGAGATTCGTTACTGTCTGGATGGAAGTG GTTACTTTGATATTCGCGACCCAGAAGACCGTTGGATTCGAATATGGGTGAEST: gi|208344591|gb|DC909150.1|DC909150
genomic: AGAGCACATGCATACGGACGAAGAGATTCGTTACTGTCTGGATGGAAGTGgtaagcatct ... tgttttacagGTTACTTTGATATTCGCGACCCAGAAGACCGTTGGATTCGAATATGGGTGA
EST: AGAGCACATGCATACGGACGAAGAGATTCGTTACTGTCTGGATGGAAGTG GTTACTTTGATATTCGCGACCCANAAGACCGTTGGATTCGAATATGGGTGAEST: gi|100405835|gb|BY973878.1|BY973878
genomic: AGAGCACATGCATACGGACGAAGAGATTCGTTACTGTCTGGATGGAAGTGgtaagcatct ... tgttttacagGTTACTTTGATATTCGCGACCCAGAAGACCGTTGGATTCGAATATGGGTGA
EST: AGAGCACATGCATACGGACGAAGAGATTCGTTACTGTCTGGATGGAAGTG GTTACTTTGATATTCGCGACCCAGAAGAC-GTTGGATTCGAATATGGGTGAEST: gi|162265235|gb|FC440158.1|FC440158
genomic: AGAGCACATGCATACGGACGAAGAGATTCGTTACTGTCTGGATGGAAGTGgtaagcatct ... tgttttacagGTTACTTTGATATTCGCGACCCAGAAGACCGTTGGATTCGAATATGGGTGA
EST: AGAGCACATGCATACGGACGAAGAGATTCGTTACTGTCTGGATGGAAGTG GTTACTTTGATATTCGCGACCCAGAAGACCGTTGGATTCGAATATGGGTGA
genomic: AGAGCACATGCATACGGACGAAGAGATTCGTTACTGTCTGGATGGAAGTGgtaagcatct ... tgttttacagGTTACTTTGATATTCGCGACCCAGAAGACCGTTGGATTCGAATATGGGTGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTCCTGAAAGATTAGCCAATTATGAGACGAAAATCAAAAACTTTTATGAAGAGCACATGCATACGGACGAAGAGATTCGTTACTGTCTGGATGGAAGTGgtaagcatcttaaatcaacgtctttgctactttatttgcacaacatgccttatgcgactctgatgggctaggatcgattcttcctacataaacacacacttgcattgcagttgttgatgcagttgttttacag
- - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG