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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGTGAGGACATGTCGGAGTCAACCAGGCCCAGAAGAGAGGAAAGAAAATACGTTGTGGATCTCGACAAGCCTCTGGTCTTTCAGgtgggcaaaagttgtgcagcccactcgatttcactttcgctgcgcaccagcaggatgatggcaaaaaaagttggtaggctagtcgttggggaaattgtga...

Basic information

species Physcomitrella patens
transcript PP1S69_244V6.4
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18353325|gb|BJ185380.1|BJ185380
EST:     GAGAGGAAAGAAAATACGTTGTGGATCTCGACAAGCCTCTGGTCTTTCAG                         GTGGGGAAACTGGGTGCCGAATATGATCAATGGGTGCACAATCCCATAGTG
genomic: GAGAGGAAAGAAAATACGTTGTGGATCTCGACAAGCCTCTGGTCTTTCAGgtgggcaaaa ... atgacttcagGTGGGGAAACTGGGTGCCGAATATGATCAATGGGTGCACAATCCCATAGTG
EST: gi|100359464|gb|BY984267.1|BY984267
EST:     GAGAGGAAAGAAAATACGTTGTGGATCTCGACAAGCCTCTGGTCTTTCAG                         GTGGGGAAACTGGGTGCCGAATATGATCAATGGGTGCAC
genomic: GAGAGGAAAGAAAATACGTTGTGGATCTCGACAAGCCTCTGGTCTTTCAGgtgggcaaaa ... atgacttcagGTGGGGAAACTGGGTGCCGAATATGATCAATGGGTGCAC
EST: gi|208380677|gb|DC903239.1|DC903239
EST:     GAGAGGAAAGAAAATACGTTGTGGATCTCGACAAGCCTCTGGTCTTTCAG                         GTGGGGAAACTGGGTGCCGAATATGATCAATGGGTGCACAATCCCATAGTG
genomic: GAGAGGAAAGAAAATACGTTGTGGATCTCGACAAGCCTCTGGTCTTTCAGgtgggcaaaa ... atgacttcagGTGGGGAAACTGGGTGCCGAATATGATCAATGGGTGCACAATCCCATAGTG
EST: gi|100429834|gb|BY978112.1|BY978112
EST:     GAGAGGAA-GAAAATACGTTGTGGATCTCGACAAGCCTCTGGTCTTTCAG                         G-GGGGAAACTGGGTGCCGGATATGATCAATGGGTGCACAATCC-ATAGGG
genomic: GAGAGGAAAGAAAATACGTTGTGGATCTCGACAAGCCTCTGGTCTTTCAGgtgggcaaaa ... atgacttcagGTGGGGAAACTGGGTGCCGAATATGATCAATGGGTGCACAATCCCATAGTG
EST: gi|100452240|gb|CJ975171.1|CJ975171
EST:     GAGAGGAAAGAAAATACGTTGTGGATCTCGACNAGCCTCTGGTCTTTCAG                         GTGGGGAAACTGGGTGCCGAATATGAT
genomic: GAGAGGAAAGAAAATACGTTGTGGATCTCGACAAGCCTCTGGTCTTTCAGgtgggcaaaa ... atgacttcagGTGGGGAAACTGGGTGCCGAATATGAT
EST: gi|100355851|gb|BY946070.1|BY946070
EST:     GAGAGGAAAGAAAATACGTTGTGGATCTCGACAAGCCTCTGGTCTTTCAG                         GTGGGGAAACTGGGTGCCGAATATGATCAATGGGTGCACAATCCCATAGTG
genomic: GAGAGGAAAGAAAATACGTTGTGGATCTCGACAAGCCTCTGGTCTTTCAGgtgggcaaaa ... atgacttcagGTGGGGAAACTGGGTGCCGAATATGATCAATGGGTGCACAATCCCATAGTG
EST: gi|208393473|gb|DC904077.1|DC904077
EST:     GAGAGGAAAGAAAATACGTTGTGGATCTCGACAAGCCTCTGGTCTTTCAG                         GTGGGGAAACTGGGTGCCGAATATGATCAATGGGTGCACAATCCCATAGTG
genomic: GAGAGGAAAGAAAATACGTTGTGGATCTCGACAAGCCTCTGGTCTTTCAGgtgggcaaaa ... atgacttcagGTGGGGAAACTGGGTGCCGAATATGATCAATGGGTGCACAATCCCATAGTG
EST: gi|100450994|gb|CJ974544.1|CJ974544
EST:     GAGAGGAAAGAAAATACGTTGTGGATCTCGACAAGCCTCTGGTCTTTCAG                         GTGGGGAAACTGGGTGCCGAATATGATCAATGGG
genomic: GAGAGGAAAGAAAATACGTTGTGGATCTCGACAAGCCTCTGGTCTTTCAGgtgggcaaaa ... atgacttcagGTGGGGAAACTGGGTGCCGAATATGATCAATGGG
EST: gi|100369359|gb|BY948062.1|BY948062
EST:     GAGAGGAAAGAAAATACGTTGTGGATCTCGACAAGCCTCTGGTCTTTCAG                         GTGGGGAAACTGGGTGCCGAATATGATCAATGGGTGCACAATCCCATAGTG
genomic: GAGAGGAAAGAAAATACGTTGTGGATCTCGACAAGCCTCTGGTCTTTCAGgtgggcaaaa ... atgacttcagGTGGGGAAACTGGGTGCCGAATATGATCAATGGGTGCACAATCCCATAGTG
EST: gi|208348919|gb|DC909828.1|DC909828
EST:     GAGAGGAAAGAAAATACGTTGTGGATCTCGACAAGCCTCTGGTCTTTCAG                         GTGGGGAAACTGGGTGCCGAATATGATCAATGGGTGCACAATCCCATAGTG
genomic: GAGAGGAAAGAAAATACGTTGTGGATCTCGACAAGCCTCTGGTCTTTCAGgtgggcaaaa ... atgacttcagGTGGGGAAACTGGGTGCCGAATATGATCAATGGGTGCACAATCCCATAGTG
EST: gi|100351771|gb|BY964541.1|BY964541
EST:     GAGAGGAAAGAAAATACGTTGTGGATCTCGACAAGCCTCTGGTCTTTCAG                         GTGGGGAAACTGGGTGCCGAATATGATCAATGGGTGCACAATC
genomic: GAGAGGAAAGAAAATACGTTGTGGATCTCGACAAGCCTCTGGTCTTTCAGgtgggcaaaa ... atgacttcagGTGGGGAAACTGGGTGCCGAATATGATCAATGGGTGCACAATC
EST: gi|100393947|gb|BY953562.1|BY953562
EST:     GAGAGGAAAGAAAATACGTTGTGGATCTCGACAAGCCTCTGGTCTTTCAG                         GTGGGGAAACTGGGTGCCGAATATGATCAATGGGTGCACAATCCCATAGTG
genomic: GAGAGGAAAGAAAATACGTTGTGGATCTCGACAAGCCTCTGGTCTTTCAGgtgggcaaaa ... atgacttcagGTGGGGAAACTGGGTGCCGAATATGATCAATGGGTGCACAATCCCATAGTG
EST: gi|100398622|gb|BY972705.1|BY972705
EST:     AGAGGAAAGAAAATACGTTGTGGATCTCGANCA-GCCTCTGGTCTTTCAG                         GTGGGGAAACTGGGTGCCGAATATGATCAATGGGTGCACAATCCCATAGTG
genomic: AGAGGAAAGAAAATACGTTGTGGATCTCGA-CAAGCCTCTGGTCTTTCAGgtgggcaaaa ... atgacttcagGTGGGGAAACTGGGTGCCGAATATGATCAATGGGTGCACAATCCCATAGTG
EST: gi|100452498|gb|CJ975301.1|CJ975301
EST:     GAGAGGGAAGAAAATACGTTGTGGATCTCGACAAGCCTCTGGTCTTTCAG                         GTGGGGAAACTGGGTGCCGAATATGATCAATGGGTGCACAATCCCATAGTG
genomic: GAGAGGAAAGAAAATACGTTGTGGATCTCGACAAGCCTCTGGTCTTTCAGgtgggcaaaa ... atgacttcagGTGGGGAAACTGGGTGCCGAATATGATCAATGGGTGCACAATCCCATAGTG
EST: gi|208356750|gb|DC906412.1|DC906412
EST:     GAGAGGAAAGAAAATACGTTGTGGATCTCGACAAGCCTCTGGTCTTTCAG                         GTGGGGAAACTGGGTGCCGAATATGATCAATGGGTGCACAATCCCATAGTG
genomic: GAGAGGAAAGAAAATACGTTGTGGATCTCGACAAGCCTCTGGTCTTTCAGgtgggcaaaa ... atgacttcagGTGGGGAAACTGGGTGCCGAATATGATCAATGGGTGCACAATCCCATAGTG
EST: gi|100380870|gb|BY986795.1|BY986795
EST:     GAGAGGAAAGAAAATACGTTGTGGATCTCGACAAGCCTCTGGTCTTTCAG                         GTGGGGAAACTGGGTGCCGGATATGATCAATGGGTGCACATTCC-ATAGTG
genomic: GAGAGGAAAGAAAATACGTTGTGGATCTCGACAAGCCTCTGGTCTTTCAGgtgggcaaaa ... atgacttcagGTGGGGAAACTGGGTGCCGAATATGATCAATGGGTGCACAATCCCATAGTG
EST: gi|100400386|gb|BY954451.1|BY954451
EST:     GAGAGGAAAGAAA-TACGTTGTGGATCTCGACAAGCCTCTGGTCTTTCAG                         GTGGGGAAACTGGGTGCCGAAATATGATCA-TGGGTGCACAATCCCATAGT
genomic: GAGAGGAAAGAAAATACGTTGTGGATCTCGACAAGCCTCTGGTCTTTCAGgtgggcaaaa ... atgacttcagGTGGGGAAACTGGGTGCCGAA-TATGATCAATGGGTGCACAATCCCATAGT
EST: gi|208397670|gb|DC908571.1|DC908571
EST:     GAGAGGAAAGAAAATACGTTGTGGATCTCGACAAGCCTCTGGTCTTTCAG                         GTGGGGAAACTGGGTGCCGAATATGATCAATGGGTGCACAATCCCATAGTG
genomic: GAGAGGAAAGAAAATACGTTGTGGATCTCGACAAGCCTCTGGTCTTTCAGgtgggcaaaa ... atgacttcagGTGGGGAAACTGGGTGCCGAATATGATCAATGGGTGCACAATCCCATAGTG
EST: gi|100371282|gb|BY986027.1|BY986027
EST:     GAGAGGAAAGAAAATACGTTGTGGATCTCGACAAGCCTCTGGTCTTTCAG                         GTGGGGAAACTGGGTGCCGAATATGATCAATGGGTGCACAATCCCATAGTG
genomic: GAGAGGAAAGAAAATACGTTGTGGATCTCGACAAGCCTCTGGTCTTTCAGgtgggcaaaa ... atgacttcagGTGGGGAAACTGGGTGCCGAATATGATCAATGGGTGCACAATCCCATAGTG
EST: gi|100432383|gb|BY960457.1|BY960457
EST:     GAGAGGAAAGAAA-TACGTTGTGGATCTCGACAAGCCTCTGGTCTTTCAG                         GTGGGGAAACTGGGTGCCGAATATGATTCA-TGGGTGCACAATCCCATAGT
genomic: GAGAGGAAAGAAAATACGTTGTGGATCTCGACAAGCCTCTGGTCTTTCAGgtgggcaaaa ... atgacttcagGTGGGGAAACTGGGTGCCGAATATGAT-CAATGGGTGCACAATCCCATAGT
EST: gi|100425925|gb|BY977189.1|BY977189
EST:     GAGAGGGAAGAAAATACGTTGTGGATCTCGACAAGCCTCTGGTCTTTCAG                         GTGGGGAAACTGGGTGCCGAATATGATCAATGGGTGCACAATCCCATAGTG
genomic: GAGAGGAAAGAAAATACGTTGTGGATCTCGACAAGCCTCTGGTCTTTCAGgtgggcaaaa ... atgacttcagGTGGGGAAACTGGGTGCCGAATATGATCAATGGGTGCACAATCCCATAGTG
EST: gi|100382936|gb|BY986977.1|BY986977
EST:     GAGAGGAAAGAAAATACGTTGTGGATCTCGACNAGCCTCTGGTCTTTCAG                         GTGGGGAAACTGGGTG
genomic: GAGAGGAAAGAAAATACGTTGTGGATCTCGACAAGCCTCTGGTCTTTCAGgtgggcaaaa ... atgacttcagGTGGGGAAACTGGGTG
EST: gi|100423152|gb|BY958172.1|BY958172
EST:     GAGAGGAAAGAAGATACGTTGTGGATCTCGACAAGCCTCTGGTCTTTCAG                         GTGGGGAAACTGGGTGCCGAATATGATCAAATGG-TGCACAATCCCATAGT
genomic: GAGAGGAAAGAAAATACGTTGTGGATCTCGACAAGCCTCTGGTCTTTCAGgtgggcaaaa ... atgacttcagGTGGGGAAACTGGGTGCCGAATATGATCAA-TGGGTGCACAATCCCATAGT
EST: gi|100396503|gb|BY990157.1|BY990157
EST:     GAGAGGAAAGAAAATACGTTGTGGATCTCGACAAGCCTCTGGTCTTTCAG                         GTGGGGAAACTGGGTGCCGAATATGATCAATGGGTGCACAATCCCATAGTG
genomic: GAGAGGAAAGAAAATACGTTGTGGATCTCGACAAGCCTCTGGTCTTTCAGgtgggcaaaa ... atgacttcagGTGGGGAAACTGGGTGCCGAATATGATCAATGGGTGCACAATCCCATAGTG
EST: gi|18354418|gb|BJ186474.1|BJ186474
EST:     GAGAGGAAAGAAAATACGTTGTGGATCTCGACAAGCCTCTGGTCTTTCAG                         GTGGGGAAACTGGGTGCCGAATATGATCAATGGGTGCACAATCCCATAGTG
genomic: GAGAGGAAAGAAAATACGTTGTGGATCTCGACAAGCCTCTGGTCTTTCAGgtgggcaaaa ... atgacttcagGTGGGGAAACTGGGTGCCGAATATGATCAATGGGTGCACAATCCCATAGTG
EST: gi|100360954|gb|BY946840.1|BY946840
EST:     GAGAGGNAAGAAAATACGTTGTGGATCTCGACAAGCCTCTGGTCTTTCAG                         GTGGGGAAACTGGGTGCCGAATATGATCAATGGGTGCACAATCCCATAGTG
genomic: GAGAGGAAAGAAAATACGTTGTGGATCTCGACAAGCCTCTGGTCTTTCAGgtgggcaaaa ... atgacttcagGTGGGGAAACTGGGTGCCGAATATGATCAATGGGTGCACAATCCCATAGTG
EST: gi|100358689|gb|BY946642.1|BY946642
EST:     GAGAGGAAAGAAAATACGTTGTGGATCTCGACAAGCCTCTGGTCTTTCAG                         GTGGG-AAACTGGGTGCCGAATATGATCAATGGGTGCACAATCCCATAGTG
genomic: GAGAGGAAAGAAAATACGTTGTGGATCTCGACAAGCCTCTGGTCTTTCAGgtgggcaaaa ... atgacttcagGTGGGGAAACTGGGTGCCGAATATGATCAATGGGTGCACAATCCCATAGTG
EST: gi|100366893|gb|BY948263.1|BY948263
EST:     GAGAGGAAAGAAAATACGTTGTGGATCTCGACAAGCCTCTGGTCTTTCAG                         GTGGGGAAACTGGGTGCCGAATATGATCAATGGGTGCACAATCCCATAGTG
genomic: GAGAGGAAAGAAAATACGTTGTGGATCTCGACAAGCCTCTGGTCTTTCAGgtgggcaaaa ... atgacttcagGTGGGGAAACTGGGTGCCGAATATGATCAATGGGTGCACAATCCCATAGTG
EST: gi|100430151|gb|BY978272.1|BY978272
EST:     GAGAGGAAAGAAAATACGTTGTGGATCTCGACAAGCCTCTGGTCTTTCAG                         GTGGGGAAACTGGGTGCCGAATATGATCAATGGGTGCACAATCCCATAGTG
genomic: GAGAGGAAAGAAAATACGTTGTGGATCTCGACAAGCCTCTGGTCTTTCAGgtgggcaaaa ... atgacttcagGTGGGGAAACTGGGTGCCGAATATGATCAATGGGTGCACAATCCCATAGTG
EST: gi|100431438|gb|BY960197.1|BY960197
EST:     GAGAGGAAAGAAAATACGTTGTGGATCTCGACAAGCCTCTGGTCTTTCAG                         GTGGGGAAACTGGGTGCCGAATATGATCAATGGGTGCACAATCCCATAGTG
genomic: GAGAGGAAAGAAAATACGTTGTGGATCTCGACAAGCCTCTGGTCTTTCAGgtgggcaaaa ... atgacttcagGTGGGGAAACTGGGTGCCGAATATGATCAATGGGTGCACAATCCCATAGTG
EST: gi|100360887|gb|BY965952.1|BY965952
EST:     GAGAGGAAAGAAA-TACGTTGTGGATCTCGACNAGCCTCTGGTCTTTCAG                         GTGGGGAAACTGGGTGCCGAATATGATCAATGGGTGCAC
genomic: GAGAGGAAAGAAAATACGTTGTGGATCTCGACAAGCCTCTGGTCTTTCAGgtgggcaaaa ... atgacttcagGTGGGGAAACTGGGTGCCGAATATGATCAATGGGTGCAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGGTGAGGACATGTCGGAGTCAACCAGGCCCAGAAGAGAGGAAAGAAAATACGTTGTGGATCTCGACAAGCCTCTGGTCTTTCAGgtgggcaaaagttgtgcagcccactcgatttcactttcgctgcgcaccagcaggatgatggcaaaaaaagttggtaggctagtcgttggggaaattgtga

- - - - - - - - - - - - - - - - -  GAGAGG
- - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - -  AAAGAA
- - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caaaaaaa