1 5' 3' | 2 5' 3' | 3 5' 3' |
TGGTCCTTTGGAACCTGCGGTGATGATGATTCAAGCGAATGCTATTTCTCTGAGGTCGTCGTGAACAGCAAGTTCGGTGCTGACAGTGACTGCCTGGACGgtatacctctcttcacaaataggaactccttcatccagttgccgcagtgagggacgtgttttttctttattttatagttttgttgaagtgaatgctgcaaaggtgtcatctcaattgtcttgaagccaataaacactgagttgaaattgttgtttgtgatgcag
species | Physcomitrella patens |
transcript | PP1S69_234V6.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TGAGGTCGTCGTGAACAGCAAGTTCGGTGCTGACAGTGACTGCCTGGACG GGACCTGCGACAATAAAGGAGGAATATCGTTTTCGTAGAGTGGCATGCGAGEST: gi|208375174|gb|DC945324.1|DC945324
genomic: TGAGGTCGTCGTGAACAGCAAGTTCGGTGCTGACAGTGACTGCCTGGACGgtatacctct ... tgtgatgcagGGACCTGCGACAATAAAGGAGGAATATCGTTTTCGTAGAGTGGCATGCGAG
EST: TGAGGTCGTCGTGAACAGCAAGTTCGGTGCTGACAGTGACTGCCTGGACG GGACCTGCGACAATAAAGGAGGAATATCGTTTTCGTAGAGTGGCATGCGAGEST: gi|208369164|gb|DC956039.1|DC956039
genomic: TGAGGTCGTCGTGAACAGCAAGTTCGGTGCTGACAGTGACTGCCTGGACGgtatacctct ... tgtgatgcagGGACCTGCGACAATAAAGGAGGAATATCGTTTTCGTAGAGTGGCATGCGAG
EST: TGAGGTCGTCGTGAACAGCAAGTTCGGTGCTGACAGTGACTGCCTGGACG GGACCTGCGACAATAAAGGAGGAATATCGTTTTCGTAGAGTGGCATGCGAGEST: gi|162222853|gb|FC399315.1|FC399315
genomic: TGAGGTCGTCGTGAACAGCAAGTTCGGTGCTGACAGTGACTGCCTGGACGgtatacctct ... tgtgatgcagGGACCTGCGACAATAAAGGAGGAATATCGTTTTCGTAGAGTGGCATGCGAG
EST: TGAGGTCGTCGTGAACAGCAAGTTCGGTGCTGACAGTGACTGCCTGGACG GGACCTGCGACAATAAAGGAGGAATATCGTTTTCGTAGAGTGGCATGCGAGEST: gi|208387415|gb|DC949200.1|DC949200
genomic: TGAGGTCGTCGTGAACAGCAAGTTCGGTGCTGACAGTGACTGCCTGGACGgtatacctct ... tgtgatgcagGGACCTGCGACAATAAAGGAGGAATATCGTTTTCGTAGAGTGGCATGCGAG
EST: TGAGGTCGTCGTGAACAGCAAGTTCGGTGCTGACAGTGACTGCCTGGACG GGACCTGCGACAATAAAGGAGGAATATCGTTTTCGTAGAGTGGCATGCGAGEST: gi|162241075|gb|FC417733.1|FC417733
genomic: TGAGGTCGTCGTGAACAGCAAGTTCGGTGCTGACAGTGACTGCCTGGACGgtatacctct ... tgtgatgcagGGACCTGCGACAATAAAGGAGGAATATCGTTTTCGTAGAGTGGCATGCGAG
EST: TGAGGTCGTCGTGAACAGCAAGTTCGGTGCTGACAGTGACTGCCTGGACG GGACCTGCGACAATAAAGGAGGAATATCGTTTTCGTAGAGTGGCATGCGAGEST: gi|67697171|gb|BJ957404.1|BJ957404
genomic: TGAGGTCGTCGTGAACAGCAAGTTCGGTGCTGACAGTGACTGCCTGGACGgtatacctct ... tgtgatgcagGGACCTGCGACAATAAAGGAGGAATATCGTTTTCGTAGAGTGGCATGCGAG
EST: TGAGGTCGTCGTGAACAGCAAGTTCGGTGCTGACAGTGACTGCCTGGACG GGACCTGCGACAATAAAGGAGGAATATCGTTTTCGTAGAGTGGCATGCGAGEST: gi|208388297|gb|DC949297.1|DC949297
genomic: TGAGGTCGTCGTGAACAGCAAGTTCGGTGCTGACAGTGACTGCCTGGACGgtatacctct ... tgtgatgcagGGACCTGCGACAATAAAGGAGGAATATCGTTTTCGTAGAGTGGCATGCGAG
EST: TGAGGTCGTCGTGAACAGCAAGTTCGGTGCTGACAGTGACTGCCTGGACG GGACCTGCGACAATAAAGGAGGAATATCGTTTTCGTAGAGTGGCATGCGAGEST: gi|208363965|gb|DC947209.1|DC947209
genomic: TGAGGTCGTCGTGAACAGCAAGTTCGGTGCTGACAGTGACTGCCTGGACGgtatacctct ... tgtgatgcagGGACCTGCGACAATAAAGGAGGAATATCGTTTTCGTAGAGTGGCATGCGAG
EST: TGAGGTCGTCGTGAACAGCAAGTTCGGTGCTGACAGTGACTGCCTGGACG GGACCTGCGACAATAAAGGAGGAATATCGTTTTCGTAGAGTGGCATGCGAGEST: gi|208352536|gb|DC918245.1|DC918245
genomic: TGAGGTCGTCGTGAACAGCAAGTTCGGTGCTGACAGTGACTGCCTGGACGgtatacctct ... tgtgatgcagGGACCTGCGACAATAAAGGAGGAATATCGTTTTCGTAGAGTGGCATGCGAG
EST: TGAGGTCGTCGTGAACAGCAAGTTCGGTGCTGACAGTGACTGCCTGGACG GGACCTGCGACAATAAAGGAGGAATATCGTTTTCGTAGAGTGGCATGCGAGEST: gi|208368487|gb|DC947888.1|DC947888
genomic: TGAGGTCGTCGTGAACAGCAAGTTCGGTGCTGACAGTGACTGCCTGGACGgtatacctct ... tgtgatgcagGGACCTGCGACAATAAAGGAGGAATATCGTTTTCGTAGAGTGGCATGCGAG
EST: TGAGGTCGTCGTGAACAGCAAGTTCGGTGCTGACAGTGACTGCCTGGACG GGACCTGCGACAATAAAGGAGGAATATCGTTTTCGTAGAGTGGCATGCGAGEST: gi|162220044|gb|FC396521.1|FC396521
genomic: TGAGGTCGTCGTGAACAGCAAGTTCGGTGCTGACAGTGACTGCCTGGACGgtatacctct ... tgtgatgcagGGACCTGCGACAATAAAGGAGGAATATCGTTTTCGTAGAGTGGCATGCGAG
EST: TGAGGTCGTCGTGAACAGCAAGTTCGGTGCTGACAGTGACTGCCTGGACG GGACCTGCGACAATAAAGGAGGAATATCGTTTTCGTAGAGTGGCATGCGAGEST: gi|162216049|gb|FC393506.1|FC393506
genomic: TGAGGTCGTCGTGAACAGCAAGTTCGGTGCTGACAGTGACTGCCTGGACGgtatacctct ... tgtgatgcagGGACCTGCGACAATAAAGGAGGAATATCGTTTTCGTAGAGTGGCATGCGAG
EST: TGAGGTCGTCGTGAACAGCAAGTTCGGTGCTGACAGTGACTGCCTGGACG GGACCTGCGACAATAAAGGAGGAATATCGTTTTCGTAGAGTGGCATGCGAGEST: gi|162179728|gb|FC356319.1|FC356319
genomic: TGAGGTCGTCGTGAACAGCAAGTTCGGTGCTGACAGTGACTGCCTGGACGgtatacctct ... tgtgatgcagGGACCTGCGACAATAAAGGAGGAATATCGTTTTCGTAGAGTGGCATGCGAG
EST: TGAGGTCGTCGTGAACAGCAAGTTCGGTGCTGACAGTGACTGCCTGGACG GGACCTGCGACAATAAAGGAGGAATATCGTTTTCGTAGAGTGGCATGCGAGEST: gi|162226950|gb|FC403333.1|FC403333
genomic: TGAGGTCGTCGTGAACAGCAAGTTCGGTGCTGACAGTGACTGCCTGGACGgtatacctct ... tgtgatgcagGGACCTGCGACAATAAAGGAGGAATATCGTTTTCGTAGAGTGGCATGCGAG
EST: TGAGGTCGTCGTGAACAGCAAGTTCGGTGCTGACAGTGACTGCCTGGACG GGACCTGCGACAATAAAGGAGGAATATCGTTTTCGTAGAGTGGCATGCGAGEST: gi|162204327|gb|FC380515.1|FC380515
genomic: TGAGGTCGTCGTGAACAGCAAGTTCGGTGCTGACAGTGACTGCCTGGACGgtatacctct ... tgtgatgcagGGACCTGCGACAATAAAGGAGGAATATCGTTTTCGTAGAGTGGCATGCGAG
EST: TGAGGTCGTCGTGAACAGCAAGTTCGGTGCTGACAGTGACTGCCTGGACG GGACCTGCGACAATAAAGGAGGAATATCGTTTTCGTAGAGTGGCATGCGAGEST: gi|37840597|gb|BJ598605.1|BJ598605
genomic: TGAGGTCGTCGTGAACAGCAAGTTCGGTGCTGACAGTGACTGCCTGGACGgtatacctct ... tgtgatgcagGGACCTGCGACAATAAAGGAGGAATATCGTTTTCGTAGAGTGGCATGCGAG
EST: TGAGGTCGTCGTGAACAGCAAGTTCGGTGCTGACAGTGACTGCCTGGACG GGACCTGCGACAATAAAGGAGGAATATCGTTTTCGTAGAGTGGCATGCGAGEST: gi|162226951|gb|FC403334.1|FC403334
genomic: TGAGGTCGTCGTGAACAGCAAGTTCGGTGCTGACAGTGACTGCCTGGACGgtatacctct ... tgtgatgcagGGACCTGCGACAATAAAGGAGGAATATCGTTTTCGTAGAGTGGCATGCGAG
EST: TGAGGTCGTCGTGAACAGCAAGTTCGGTGCTGACAGTGACTGCCTGGACG GGACCTGCGACAATAAAGGAGGAATATCGTTTTCGTAGAGTGGCATGCGAG
genomic: TGAGGTCGTCGTGAACAGCAAGTTCGGTGCTGACAGTGACTGCCTGGACGgtatacctct ... tgtgatgcagGGACCTGCGACAATAAAGGAGGAATATCGTTTTCGTAGAGTGGCATGCGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGTCCTTTGGAACCTGCGGTGATGATGATTCAAGCGAATGCTATTTCTCTGAGGTCGTCGTGAACAGCAAGTTCGGTGCTGACAGTGACTGCCTGGACGgtatacctctcttcacaaataggaactccttcatccagttgccgcagtgagggacgtgttttttctttattttatagttttgttgaagtgaatgctgcaaaggtgtcatctcaattgtcttgaagccaataaacactgagttgaaattgttgtttgtgatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG