1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GTTCTACAACTTCATAGAGAAGACGTATCCAATTCACCCGATGCTACTGGCAGCAGCGTTGTATGCCGTGGGAGGATTTCCTTACATCGTGTGGGGCATGgtaagagtggtggctgtgtatgaggaggagtggtgttttggtgtggagtgagtaggtgcaacggagggtgtgtgggaagcgtgggagagggttgagggag...
species | Physcomitrella patens |
transcript | PP1S68_264V6.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CAGCAGCGTTGTATGCCGTGGGAGGATTTCCTTACATCGTGTGGGGCATG GCTGTGAGGACGGTGTGGGTGTATCACATCACATGGTTTGTGAACTCTGCAEST: gi|208351223|gb|DC918110.1|DC918110
genomic: CAGCAGCGTTGTATGCCGTGGGAGGATTTCCTTACATCGTGTGGGGCATGgtaagagtgg ... tggggtgcagGCTGTGAGGACGGTGTGGGTGTATCACATCACATGGTTTGTGAACTCTGCA
EST: CAGCAGCGTTGTATGCCGTGGGAGGATTTCCTTACATCGTGTGGGGCATG GCTGTGAGGACGGTGTGGGTGTATCACATCACATGGTTTGTGAACTCTGCAEST: gi|162172977|gb|FC347887.1|FC347887
genomic: CAGCAGCGTTGTATGCCGTGGGAGGATTTCCTTACATCGTGTGGGGCATGgtaagagtgg ... tggggtgcagGCTGTGAGGACGGTGTGGGTGTATCACATCACATGGTTTGTGAACTCTGCA
EST: CAGCAGCGTTGTATGCCGTGGGAGGATTTCCTTACATCGTGTGGGGCATG GCTGTGAGGACGGTGTGGGTGTATCACATCACATGGTTTGTGAACTCTGCAEST: gi|18339157|gb|BJ171184.1|BJ171184
genomic: CAGCAGCGTTGTATGCCGTGGGAGGATTTCCTTACATCGTGTGGGGCATGgtaagagtgg ... tggggtgcagGCTGTGAGGACGGTGTGGGTGTATCACATCACATGGTTTGTGAACTCTGCA
EST: CAGCAGCGTTGTATGCCGTGGGAGGATTTCCTTACATCGTGTGGGGCATG GCTGTGAGGACGGTGTGGGTGTATCACATCACATGGTTTGTGAACTCTGCA
genomic: CAGCAGCGTTGTATGCCGTGGGAGGATTTCCTTACATCGTGTGGGGCATGgtaagagtgg ... tggggtgcagGCTGTGAGGACGGTGTGGGTGTATCACATCACATGGTTTGTGAACTCTGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTCTACAACTTCATAGAGAAGACGTATCCAATTCACCCGATGCTACTGGCAGCAGCGTTGTATGCCGTGGGAGGATTTCCTTACATCGTGTGGGGCATGgtaagagtggtggctgtgtatgaggaggagtggtgttttggtgtggagtgagtaggtgcaacggagggtgtgtgggaagcgtgggagagggttgagggag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT