1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GAGCACCGTTTGTGTTTATGGTGGAGCACCTTATGGTCCTCAAGAGAACGCATTAAGGAGGGGTGTTGATATTGTGGTGGGCACACCAGGGAGGATCAAGgtatctcacagttttttcgtccttttcatcagtgcctaagtaatgtcttcttaatgtttgcaaataactgcattcattttacatagcatttcggcctaggctgacacactctcaactgctgcag
species | Physcomitrella patens |
transcript | PP1S67_231V6.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CATTAAGGAGGGGTGTTGATATTGTGGTGGGCACACCAGGGAGGATCAAG GATCACTTCGAGAGGGGCACTTTGAACTTGAAATCTTTAAAGTTCCGCATTEST: gi|162203869|gb|FC379966.1|FC379966
genomic: CATTAAGGAGGGGTGTTGATATTGTGGTGGGCACACCAGGGAGGATCAAGgtatctcaca ... actgctgcagGATCACTTCGAGAGGGGCACTTTGAACTTGAAATCTTTAAAGTTCCGCATT
EST: TGTTGATATTGTGGTGGGCACACCAGGGAGGATCAAG GATCACTTCGAGAGGGGCACTTTGAACTTGAAATCTTTAAAGTTCCGCATTEST: gi|100415313|gb|BY975254.1|BY975254
genomic: TGTTGATATTGTGGTGGGCACACCAGGGAGGATCAAGgtatctcaca ... actgctgcagGATCACTTCGAGAGGGGCACTTTGAACTTGAAATCTTTAAAGTTCCGCATT
EST: TTAAGGAGGGGTGTTGATATTGTGGTGGGCACACCAGGGAGGATCAAG GATCACTTCGAGAGGGGCACTTTGAACTTGAAATCTTTAAAGTTCCGCATTEST: gi|162257462|gb|FC433323.1|FC433323
genomic: TTAAGGAGGGGTGTTGATATTGTGGTGGGCACACCAGGGAGGATCAAGgtatctcaca ... actgctgcagGATCACTTCGAGAGGGGCACTTTGAACTTGAAATCTTTAAAGTTCCGCATT
EST: CATTAAGGAGGGGTGTTGATATTGTGGTGGGCACACCAGGGAGGATCAAG GATCACTTCGAGAGGGGCACTTTGAACTTGAAATCTTTAAAGTTCCGCATTEST: gi|162165696|gb|FC342263.1|FC342263
genomic: CATTAAGGAGGGGTGTTGATATTGTGGTGGGCACACCAGGGAGGATCAAGgtatctcaca ... actgctgcagGATCACTTCGAGAGGGGCACTTTGAACTTGAAATCTTTAAAGTTCCGCATT
EST: CATTAAGGAGGGGTGTTGATATTGTGGTGGGCACACCAGGGAGGATCAAG GATCACTTCGAGAGGGGCACTTTGAACTTGAAATCTTTAAAGTTCCGCATTEST: gi|162155569|gb|FC331013.1|FC331013
genomic: CATTAAGGAGGGGTGTTGATATTGTGGTGGGCACACCAGGGAGGATCAAGgtatctcaca ... actgctgcagGATCACTTCGAGAGGGGCACTTTGAACTTGAAATCTTTAAAGTTCCGCATT
EST: CATTAAGGAGGGGTGTTGATATTGTGGTGGGCACACCAGGGAGGATCAAG GATCACTTCGAGAGGGGCACTTTGAACTTGAAATCTTTAAAGTTCCGCATTEST: gi|162254871|gb|FC430848.1|FC430848
genomic: CATTAAGGAGGGGTGTTGATATTGTGGTGGGCACACCAGGGAGGATCAAGgtatctcaca ... actgctgcagGATCACTTCGAGAGGGGCACTTTGAACTTGAAATCTTTAAAGTTCCGCATT
EST: CATTAAGGAGGGGTGTTGATATTGTGGTGGGCACACCAGGGAGGATCAAG GATCACTTCGAGAGGGGCACTTTGAACTTGAAATCTTTAAAGTTCCGCATT
genomic: CATTAAGGAGGGGTGTTGATATTGTGGTGGGCACACCAGGGAGGATCAAGgtatctcaca ... actgctgcagGATCACTTCGAGAGGGGCACTTTGAACTTGAAATCTTTAAAGTTCCGCATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGCACCGTTTGTGTTTATGGTGGAGCACCTTATGGTCCTCAAGAGAACGCATTAAGGAGGGGTGTTGATATTGTGGTGGGCACACCAGGGAGGATCAAGgtatctcacagttttttcgtccttttcatcagtgcctaagtaatgtcttcttaatgtttgcaaataactgcattcattttacatagcatttcggcctaggctgacacactctcaactgctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT