1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GTTACAGTCAGCAAGCTTTGGAGGACAGTTGGTGAAGAATTTAAACCTCCCAAgtacgattttctgggtttcatgatttttgcaattgagatgttagatccacaagcttagttgctgtgaatgtcgagcatcactgtaatagatatagcttgt...
species | Physcomitrella patens |
transcript | PP1S66_226V6.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: ACAGTCAGCAAGCTTTGGAGGACAGTTGGTGAAGAATTTAAACCTCCCAA GACCTGTACTACAATTTCATGGTCGTTTCGAGGCTTTTATGAGAAGEST: gi|162168315|gb|FC344629.1|FC344629
genomic: ACAGTCAGCAAGCTTTGGAGGACAGTTGGTGAAGAATTTAAACCTCCCAAgtacgatttt ... ttcttcacagGACCTGTACTACAATTTCATGGTCGTTTCGAGGCTTTTATGAGAAG
EST: ACAGTCAGCAAGCTTTGGAGGACAGTTGGTGAAGAATTTAAACCTCCCAA GACCTGTACTACAATTTCATGGTCGTTTCGAGGCTTTTATGAGAAGEST: gi|162231559|gb|FC408204.1|FC408204
genomic: ACAGTCAGCAAGCTTTGGAGGACAGTTGGTGAAGAATTTAAACCTCCCAAgtacgatttt ... ttcttcacagGACCTGTACTACAATTTCATGGTCGTTTCGAGGCTTTTATGAGAAG
EST: ACAGTCAGCAAGCTTTGGAGGACAGTTGGTGAAGAATTTAAACCTCCCAA GACCTGTACTACAATTTCATGGTCGTTTCGAGGCTTTTATGAGAAGEST: gi|162159601|gb|FC335779.1|FC335779
genomic: ACAGTCAGCAAGCTTTGGAGGACAGTTGGTGAAGAATTTAAACCTCCCAAgtacgatttt ... ttcttcacagGACCTGTACTACAATTTCATGGTCGTTTCGAGGCTTTTATGAGAAG
EST: ACAGTCAGCAAGCTTTGGAGGACAGTTGGTGAAGAATTTAAACCTCCCAA GACCTGTACTACAATTTCATGGTCGTTTCGAGGCTTTTATGAGAAG
genomic: ACAGTCAGCAAGCTTTGGAGGACAGTTGGTGAAGAATTTAAACCTCCCAAgtacgatttt ... ttcttcacagGACCTGTACTACAATTTCATGGTCGTTTCGAGGCTTTTATGAGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTACAGTCAGCAAGCTTTGGAGGACAGTTGGTGAAGAATTTAAACCTCCCAAgtacgattttctgggtttcatgatttttgcaattgagatgttagatccacaagcttagttgctgtgaatgtcgagcatcactgtaatagatatagcttgt
- - - - AGCAAG
- - - - - CAAGCT
- - - - - - - - TTGGAG
- - - - - - - - - TGGAGG
- - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - TGAAGA