1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GATCTTGCATTTGATCTTTCACTGGCGGCCTTGTTGGGGGACAACATCTATAACTTCGGAGAGCTTCTTGCCCACCCTATCgtaagtttttcaagcatattttggtgctatttcgtatatccctgatgtattgtctttgttctccttcgtttgatgtcatctaacttataacactggcagt...
species | Physcomitrella patens |
transcript | PP1S66_117V6.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TGTTGGGGGACAACATCTATAACTTCGGAGAGCTTCTTGCCCACCCTATC GTCAAGAGTCTATTGGGGACAAGTGTAGAGTGGCTGTATTTTATCTTGCAAEST: gi|37845605|gb|BJ603613.1|BJ603613
genomic: TGTTGGGGGACAACATCTATAACTTCGGAGAGCTTCTTGCCCACCCTATCgtaagttttt ... tgacttgtagGTCAAGAGTCTATTGGGGACAAGTGTAGAGTGGCTGTATTTTATCTTGCAA
EST: GGGGGACAACATTTATAACTTCGGAGAGCTTCTTGCCCACCCTATC GTCAAGAGTCTATTGGGGACAAGTGTAGAGTGGCTGTATTTTATCTTGCAAEST: gi|18340009|gb|BJ172037.1|BJ172037
genomic: GGGGGACAACATCTATAACTTCGGAGAGCTTCTTGCCCACCCTATCgtaagttttt ... tgacttgtagGTCAAGAGTCTATTGGGGACAAGTGTAGAGTGGCTGTATTTTATCTTGCAA
EST: TGTTGGGGGACAACATCTATAACTTCGGAGAGCTTCTTGCCCACCCTATC GTCAAGAGTCTATTGGGGACAAGTGTAGAGTGGCTGTATTTTATCTTGCAA
genomic: TGTTGGGGGACAACATCTATAACTTCGGAGAGCTTCTTGCCCACCCTATCgtaagttttt ... tgacttgtagGTCAAGAGTCTATTGGGGACAAGTGTAGAGTGGCTGTATTTTATCTTGCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATCTTGCATTTGATCTTTCACTGGCGGCCTTGTTGGGGGACAACATCTATAACTTCGGAGAGCTTCTTGCCCACCCTATCgtaagtttttcaagcatattttggtgctatttcgtatatccctgatgtattgtctttgttctccttcgtttgatgtcatctaacttataacactggcagt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT