1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CGTCACATGTTAAAGGGGTGCATCAACGATTCAAATTGTATGAGGCATATGCTGACCACTAAGTTTGGCTTTCCTGCAGCATCGATCCTAACACTTACCGgtaagtggtcactcctatttttgtggcatcatctttgtcaaatgacatgaataactcagctttgttgaatgtatttttttgttctattagaggtcccttactttgtgtcacttgtttatggtgacaatgatcgagttagatgtttattcgctttgttgctgtggtaatttgcag
species | Physcomitrella patens |
transcript | PP1S65_2V6.3 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GCTGACCACTAAGTTTGGCTTTCCTGCAGCATCGATCCTAACACTTACCG AAGAACAACCTAGTGCAGTGATGAAGCCGACACGTTACAACATGCATATGGEST: gi|67692649|gb|BJ952882.1|BJ952882
genomic: GCTGACCACTAAGTTTGGCTTTCCTGCAGCATCGATCCTAACACTTACCGgtaagtggtc ... taatttgcagAAGAACAACCTAGTGCAGTGATGAAGCCGACACGTTACAACATGCATATGG
EST: CCTGCAGCATCGATCCTAACACTTACCG AAGAACAACCTAGTGCAGTGATGAAGCCGACACGTTACAACATGCATATGGEST: gi|67507918|gb|BJ940793.1|BJ940793
genomic: CCTGCAGCATCGATCCTAACACTTACCGgtaagtggtc ... taatttgcagAAGAACAACCTAGTGCAGTGATGAAGCCGACACGTTACAACATGCATATGG
EST: GCTGACCACTAAGTTTGGCTTTCCTGCAGCATCGATCCTAACACTTACCG AAGAACAACCTAGTGCAGTGATGAAEST: gi|100413675|gb|BY974934.1|BY974934
genomic: GCTGACCACTAAGTTTGGCTTTCCTGCAGCATCGATCCTAACACTTACCGgtaagtggtc ... taatttgcagAAGAACAACCTAGTGCAGTGATGAA
EST: GCTGACCACTAAGTTTGGCTTTCCTGCAGCATCGATCCTAACACTTACCG AAGAACAACCTAGTGCAGTGATGAAGCCGACACGTTACAACATGCATATGG
genomic: GCTGACCACTAAGTTTGGCTTTCCTGCAGCATCGATCCTAACACTTACCGgtaagtggtc ... taatttgcagAAGAACAACCTAGTGCAGTGATGAAGCCGACACGTTACAACATGCATATGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGTCACATGTTAAAGGGGTGCATCAACGATTCAAATTGTATGAGGCATATGCTGACCACTAAGTTTGGCTTTCCTGCAGCATCGATCCTAACACTTACCGgtaagtggtcactcctatttttgtggcatcatctttgtcaaatgacatgaataactcagctttgttgaatgtatttttttgttctattagaggtcccttactttgtgtcacttgtttatggtgacaatgatcgagttagatgtttattcgctttgttgctgtggtaatttgcag
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