1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CTTGGTTCAACGGCAGTAGGATTGAAGACCAAGGAGGGTGTTGTCTTGGCTGTTGAGAAACGAATTACCTCAGTTTTACTGgtaggttttagaattaagcttctcactcaatctttgtgggtcagggttttgaattgcttttccaatgttggttgtagagtagattctgcagctatttcat...
species | Physcomitrella patens |
transcript | PP1S65_295V6.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AGGAGGGTGTTGTCTTGGCTGTTGAGAAACGAATTACCTCAGTTTTACTG GAACCCACCAGTGTCGAGAAGATCATGGAAATCGATGAGCATATTGGGTGTEST: gi|208356707|gb|DC902539.1|DC902539
genomic: AGGAGGGTGTTGTCTTGGCTGTTGAGAAACGAATTACCTCAGTTTTACTGgtaggtttta ... tggcttgcagGAACCCACCAGTGTCGAGAAGATCATGGAAATCGATGAGCATATTGGGTGT
EST: AGGAGGGTGTTGTCTTGGCTGTTGAGAAACGAATTACCTCAGTTTTACTG GAACCCACCAGTGTCGAGAAGATCATGGAAATCGATGAGCATATTGGGTGTEST: gi|208376352|gb|DC932262.1|DC932262
genomic: AGGAGGGTGTTGTCTTGGCTGTTGAGAAACGAATTACCTCAGTTTTACTGgtaggtttta ... tggcttgcagGAACCCACCAGTGTCGAGAAGATCATGGAAATCGATGAGCATATTGGGTGT
EST: AGGAGGGTGTTGTCTTGGCTGTTGAGAAACGAATTACCTCAGTTTTACTG GAACCCACCAGTGTCGAGAAGATCATGGAAATCGATGAGCATATTGGGTGTEST: gi|162202744|gb|FC379037.1|FC379037
genomic: AGGAGGGTGTTGTCTTGGCTGTTGAGAAACGAATTACCTCAGTTTTACTGgtaggtttta ... tggcttgcagGAACCCACCAGTGTCGAGAAGATCATGGAAATCGATGAGCATATTGGGTGT
EST: AGGAGGGTGTTGTCTTGGCTGTTGAGAAACGAATTACCTCAGTTTTACTG GAACCCACCAGTGTCGAGAAGATCATGGAAATCGATGAGCATATTGGGTGT
genomic: AGGAGGGTGTTGTCTTGGCTGTTGAGAAACGAATTACCTCAGTTTTACTGgtaggtttta ... tggcttgcagGAACCCACCAGTGTCGAGAAGATCATGGAAATCGATGAGCATATTGGGTGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTGGTTCAACGGCAGTAGGATTGAAGACCAAGGAGGGTGTTGTCTTGGCTGTTGAGAAACGAATTACCTCAGTTTTACTGgtaggttttagaattaagcttctcactcaatctttgtgggtcagggttttgaattgcttttccaatgttggttgtagagtagattctgcagctatttcat
- - - - - - - - - - - - - - - - - - - - - - - - GCTGTT