Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAACATCGAGGCGGTCCTAAAGACATATCACATGATGTCCCAAAGATGGTTCACCCACGCGTCTCCAACCCTATTCAACGCAGGGACTCCCCGGCCGCAGgttcggctatctattccttttgtgcgtgcgctctttgcactgaaccaagcctggtcagtcgtgaatgcgagtactaattggttgttcgaatgttgcag

Basic information

species Physcomitrella patens
transcript PP1S64_38V6.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S64_38V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GLYMA05G32070.1 (Glycine max), 5'ss of exon 4
GAACATCGAGGCGGTCCTAAAGACATATCACATGATGTCCCAAAGATGGTTCACCCACGCGTCTCCAACCCTATTCAACGCAGGGACTCCCCGGCCGCAGgttcggctatc-----tattccttttgtgcgtgcgctctttgcactg-aaccaagcctggt-----cagtcgtgaatgcg-agtactaattggttgttcgaatgttgcag-----------------------
  |||| ||  | |   | |  ||||| ||||||||||| || ||||||||||| || || |||||||| || ||||| ||||| || ||  |||| |||||   | |        |  || ||   | | ||    | ||    ||  | || |    ||       ||| | | || | |  | || |  | ||  |  |||  |  |                       
TGACATTGATTCTGCTGTCAGAACATACCACATGATGTCTCAGAGATGGTTCACTCATGCATCTCCAACACTTTTCAATGCAGGAACACCTAGGCCTCAGgtatagtttctgttaatgctctttccctccatgtctccctttttttgtgagcatgtggtgtgctttttgtccttattgtgtaagattactatggtgaccttatgcagttggatatgtttatgtgcattggcag