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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCACCCTTTCTTATGGACGATCCACACGTGGGATTACTGTTTCCTGAAGATGCCATTGCTAGAGCGAAGCATTACTTGGCTATGACCTCAGGAGGCGTTGgtaagtaaatcatttgttctctactctgcagttgaactatgtggaaatttgaatgtatctttattagtattagacagaaagctttgtggacggtgaacaa...

Basic information

species Physcomitrella patens
transcript PP1S64_220V6.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100388772|gb|BY970920.1|BY970920
EST:     TGCCATTGCTAGAGCGAAGCATTACTTGGCTATGACCTCAGGAGGCGTTG                         GGGCTTACAGTGACTCGAGGGGGCTTCCTGGGGTACGGCAAGAGGTCGCAG
genomic: TGCCATTGCTAGAGCGAAGCATTACTTGGCTATGACCTCAGGAGGCGTTGgtaagtaaat ... ttatgagcagGGGCTTACAGTGACTCGAGGGGGCTTCCTGGGGTACGGCAAGAGGTCGCAG
EST: gi|18326988|gb|BJ158989.1|BJ158989
EST:     TGCCATTGCTAGAGCGAAGCATTACTTGGCTATGACCTCAGGAGGCGTTG                         GGGCTTACAGTGACTCGAGGGGGCTTCCTGGGGTACGGCAAGAGGTCGCAG
genomic: TGCCATTGCTAGAGCGAAGCATTACTTGGCTATGACCTCAGGAGGCGTTGgtaagtaaat ... ttatgagcagGGGCTTACAGTGACTCGAGGGGGCTTCCTGGGGTACGGCAAGAGGTCGCAG
EST: gi|162155391|gb|FC332005.1|FC332005
EST:     TGCCATTGCTAGAGCGAAGCATTACTTGGCTATGACCTCAGGAGGCGTTG                         GGGCTTACAGTGACTCGAGGGGGCTTCCTGGGGTACGGCAAGAGGTCGCAG
genomic: TGCCATTGCTAGAGCGAAGCATTACTTGGCTATGACCTCAGGAGGCGTTGgtaagtaaat ... ttatgagcagGGGCTTACAGTGACTCGAGGGGGCTTCCTGGGGTACGGCAAGAGGTCGCAG
EST: gi|100436557|gb|BY961277.1|BY961277
EST:     TGCCATTGCTAGAGCGAAGCATTACTTGGCTATGACCTCAGGAGGCGTTG                         GGGCTTACAGTGACTCGAGGGGGCTTCCTGGGGTACGGCAAGAGGTCGCAG
genomic: TGCCATTGCTAGAGCGAAGCATTACTTGGCTATGACCTCAGGAGGCGTTGgtaagtaaat ... ttatgagcagGGGCTTACAGTGACTCGAGGGGGCTTCCTGGGGTACGGCAAGAGGTCGCAG
EST: gi|100419458|gb|BY957584.1|BY957584
EST:     TGCCATTGCTAGAGCGAAGCATTACTTGGCTATGACCTCAGGAGGCGTTG                         GGGCTTACAGTGACTCGAGGGGGCTTCCTGGGGTACGGCAAGAGGTCGCAG
genomic: TGCCATTGCTAGAGCGAAGCATTACTTGGCTATGACCTCAGGAGGCGTTGgtaagtaaat ... ttatgagcagGGGCTTACAGTGACTCGAGGGGGCTTCCTGGGGTACGGCAAGAGGTCGCAG
EST: gi|100356833|gb|BY965303.1|BY965303
EST:     TGCCATTGCTAGAGCGAAGCATTACTTGGCTATGACCTCAGGAGGCGTTG                         GGGCTTACAGTGACTCGAGGGGGCTTCCTGGGGTACGGCAAGAGGTCGCAG
genomic: TGCCATTGCTAGAGCGAAGCATTACTTGGCTATGACCTCAGGAGGCGTTGgtaagtaaat ... ttatgagcagGGGCTTACAGTGACTCGAGGGGGCTTCCTGGGGTACGGCAAGAGGTCGCAG
EST: gi|162181882|gb|FC357689.1|FC357689
EST:     TGCCATTGCTAGAGCGAAGCATTACTTGGCTATGACCTCAGGAGGCGTTG                         GGGCTTACAGTGACTCGAGGGGGCTTCCTGGGGTACGGCAAGAGGTCGCAG
genomic: TGCCATTGCTAGAGCGAAGCATTACTTGGCTATGACCTCAGGAGGCGTTGgtaagtaaat ... ttatgagcagGGGCTTACAGTGACTCGAGGGGGCTTCCTGGGGTACGGCAAGAGGTCGCAG
EST: gi|100352692|gb|BY945399.1|BY945399
EST:     TGCCATTGCTAGAGCGAAGCATTACTTGGCTATGACCTCAGGAGGCGTTG                         GGGCTTACAGTGACTCGAGGGGGCTTCCTGGGGTACGGCAAGAGGTCGCAG
genomic: TGCCATTGCTAGAGCGAAGCATTACTTGGCTATGACCTCAGGAGGCGTTGgtaagtaaat ... ttatgagcagGGGCTTACAGTGACTCGAGGGGGCTTCCTGGGGTACGGCAAGAGGTCGCAG
EST: gi|162171669|gb|FC348130.1|FC348130
EST:     TGCCATTGCTAGAGCGAAGCATTACTTGGCTATGACCTCAGGAGGCGTTG                         GGGCTTACAGTGACTCGAGGGGGCTTCCTGGGGTACGGCAAGAGGTCGCAG
genomic: TGCCATTGCTAGAGCGAAGCATTACTTGGCTATGACCTCAGGAGGCGTTGgtaagtaaat ... ttatgagcagGGGCTTACAGTGACTCGAGGGGGCTTCCTGGGGTACGGCAAGAGGTCGCAG
EST: gi|100385535|gb|BY969872.1|BY969872
EST:     TGCCATTGCTAGAGCGAAGCATTACTTGGCTATGACCTCAGGAGGCGTTG                         GGGCTTACAGTGACTCGAGGGGGCTTCCTGGGGTACGGCAAGAGGTCGCAG
genomic: TGCCATTGCTAGAGCGAAGCATTACTTGGCTATGACCTCAGGAGGCGTTGgtaagtaaat ... ttatgagcagGGGCTTACAGTGACTCGAGGGGGCTTCCTGGGGTACGGCAAGAGGTCGCAG
EST: gi|162199479|gb|FC373781.1|FC373781
EST:     TGCCATTGCTAGAGCGAAGCATTACTTGGCTATGACCTCAGGAGGCGTTG                         GGGCTTACAGTGACTCGAGGGGGCTTCCTGGGGTACGGCAAGAGGTCGCAG
genomic: TGCCATTGCTAGAGCGAAGCATTACTTGGCTATGACCTCAGGAGGCGTTGgtaagtaaat ... ttatgagcagGGGCTTACAGTGACTCGAGGGGGCTTCCTGGGGTACGGCAAGAGGTCGCAG
EST: gi|162223962|gb|FC400320.1|FC400320
EST:     TGCCATTGCTAGAGCGAAGCATTACTTGGCTATGACCTCAGGAGGCGTTG                         GGGCTTACAGTGACTCGAGGGGGCTTCCTGGGGTACGGCAAGAGGTCGCAG
genomic: TGCCATTGCTAGAGCGAAGCATTACTTGGCTATGACCTCAGGAGGCGTTGgtaagtaaat ... ttatgagcagGGGCTTACAGTGACTCGAGGGGGCTTCCTGGGGTACGGCAAGAGGTCGCAG
EST: gi|162160782|gb|FC336681.1|FC336681
EST:     TGCCATTGCTAGAGCGAAGCATTACTTGGCTATGACCTCAGGAGGCGTTG                         GGGCTTACAGTGACTCGAGGGGGCTTCCTGGGGTACGGCAAGAGGTCGCAG
genomic: TGCCATTGCTAGAGCGAAGCATTACTTGGCTATGACCTCAGGAGGCGTTGgtaagtaaat ... ttatgagcagGGGCTTACAGTGACTCGAGGGGGCTTCCTGGGGTACGGCAAGAGGTCGCAG
EST: gi|100399005|gb|BY990625.1|BY990625
EST:     TGCCATTGCTAGAGCGAAGCATTACTTGGCTATGACCTCAGGAGGCGTTG                         GGGCTTACAGTGACTCGAGGGGGCTTCCTGGGGTACGGCAAGAGGTCGCAG
genomic: TGCCATTGCTAGAGCGAAGCATTACTTGGCTATGACCTCAGGAGGCGTTGgtaagtaaat ... ttatgagcagGGGCTTACAGTGACTCGAGGGGGCTTCCTGGGGTACGGCAAGAGGTCGCAG
EST: gi|162197024|gb|FC373364.1|FC373364
EST:     TGCCATTGCTAGAGCGAAGCATTACTTGGCTATGACCTCAGGAGGCGTTG                         GGGCTTACAGTGACTCGAGGGGGCTTCCTGGGGTACGGCAAGAGGTCGCAG
genomic: TGCCATTGCTAGAGCGAAGCATTACTTGGCTATGACCTCAGGAGGCGTTGgtaagtaaat ... ttatgagcagGGGCTTACAGTGACTCGAGGGGGCTTCCTGGGGTACGGCAAGAGGTCGCAG
EST: gi|100371629|gb|BY968072.1|BY968072
EST:     TGCCATTGCTAGAGCGAAGCATTACTTGGCTATGACCTCAGGAGGCGTTG                         GGGCTTACAGTGACTCGAGGGGGCTTCCTGGGGTACGGCAAGAGGTCGCAG
genomic: TGCCATTGCTAGAGCGAAGCATTACTTGGCTATGACCTCAGGAGGCGTTGgtaagtaaat ... ttatgagcagGGGCTTACAGTGACTCGAGGGGGCTTCCTGGGGTACGGCAAGAGGTCGCAG
EST: gi|100419055|gb|BY975835.1|BY975835
EST:     TGCCATTGCTAGAGCGAAGCATTACTTGGCCATGACCTCAGGAGGCGTTG                         GGGCTTACAGTGACTCGAGGGGGCTTCCTNGGGTACGGCAAGAGGTCGCAG
genomic: TGCCATTGCTAGAGCGAAGCATTACTTGGCTATGACCTCAGGAGGCGTTGgtaagtaaat ... ttatgagcagGGGCTTACAGTGACTCGAGGGGGCTTCCTGGGGTACGGCAAGAGGTCGCAG
EST: gi|162252058|gb|FC428297.1|FC428297
EST:     TGCCATTGCTAGAGCGAAGCATTACTTGGCTATGACCTCAGGAGGCGTTG                         GGGCTTACAGTGACTCGAGGGGGCTTCCTGGGGTACGGCAAGAGGTCGCAG
genomic: TGCCATTGCTAGAGCGAAGCATTACTTGGCTATGACCTCAGGAGGCGTTGgtaagtaaat ... ttatgagcagGGGCTTACAGTGACTCGAGGGGGCTTCCTGGGGTACGGCAAGAGGTCGCAG
EST: gi|100425857|gb|BY977155.1|BY977155
EST:     TGCCATTGCTAGAGCGAAGCATTACTTGGCTATGACCTCAGGAGGCGTTG                         GGGCTTACAGTGACTCGAGGGGGCTTCCTGGGGTACGGCAAGAGGTCGCAG
genomic: TGCCATTGCTAGAGCGAAGCATTACTTGGCTATGACCTCAGGAGGCGTTGgtaagtaaat ... ttatgagcagGGGCTTACAGTGACTCGAGGGGGCTTCCTGGGGTACGGCAAGAGGTCGCAG
EST: gi|100412607|gb|BY974818.1|BY974818
EST:     TGCCATTGCTAGAGCGAAGCATTACTTGGCTATGACCTCAGGAGGCGTTG                         GGGCTTACAGTGACTCGAGGGGGCTTCCTGGGGTACGGCAAGAGGTCGCAG
genomic: TGCCATTGCTAGAGCGAAGCATTACTTGGCTATGACCTCAGGAGGCGTTGgtaagtaaat ... ttatgagcagGGGCTTACAGTGACTCGAGGGGGCTTCCTGGGGTACGGCAAGAGGTCGCAG
EST: gi|100444613|gb|BY982442.1|BY982442
EST:     TGCCATTGCTAGAGCGAAGCATTACTTGGCTATGACCTCAGGAGGCGTTG                         GGGCTTACAGTGACTCGAGGGGGCTTCCTGGGGTACGGCAAGAGGTCGCAG
genomic: TGCCATTGCTAGAGCGAAGCATTACTTGGCTATGACCTCAGGAGGCGTTGgtaagtaaat ... ttatgagcagGGGCTTACAGTGACTCGAGGGGGCTTCCTGGGGTACGGCAAGAGGTCGCAG
EST: gi|162153784|gb|FC329915.1|FC329915
EST:     TGCCATTGCTAGAGCGAAGCATTACTTGGCTATGACCTCAGGAGGCGTTG                         GGGCTTACAGTGACTCGAGGGGGCTTCCTGGGGTACGGCAAGAGGTCGCAG
genomic: TGCCATTGCTAGAGCGAAGCATTACTTGGCTATGACCTCAGGAGGCGTTGgtaagtaaat ... ttatgagcagGGGCTTACAGTGACTCGAGGGGGCTTCCTGGGGTACGGCAAGAGGTCGCAG
EST: gi|162154422|gb|FC330424.1|FC330424
EST:     TGCCATTGCTAGAGCGAAGCATTACTTGGCTATGACCTCAGGAGGCGTTG                         GGGCTTACAGTGACTCGAGGGGGCTTCCTGGGGTACGGCAAGAGGTCGCAG
genomic: TGCCATTGCTAGAGCGAAGCATTACTTGGCTATGACCTCAGGAGGCGTTGgtaagtaaat ... ttatgagcagGGGCTTACAGTGACTCGAGGGGGCTTCCTGGGGTACGGCAAGAGGTCGCAG
EST: gi|100356462|gb|BY946377.1|BY946377
EST:     TGCCATTGCTAGAGCGAAGCATTACTTGGCTATGACCTCAGGAGGCGTTG                         GGGCTTACAGTGACTCGAGGGGGCTTCCTGGGGTACGGCAAGAGGTCGCAG
genomic: TGCCATTGCTAGAGCGAAGCATTACTTGGCTATGACCTCAGGAGGCGTTGgtaagtaaat ... ttatgagcagGGGCTTACAGTGACTCGAGGGGGCTTCCTGGGGTACGGCAAGAGGTCGCAG
EST: gi|100364771|gb|BY947900.1|BY947900
EST:     TGCCATTGCTAGAGCGAAGCATTACTTGGCTATGACCTCAGGAGGCGTTG                         GGGCTTACAGTGACTCGAGGGGGCTTCCTGGGGTACGGCAAGAGGTCGCAG
genomic: TGCCATTGCTAGAGCGAAGCATTACTTGGCTATGACCTCAGGAGGCGTTGgtaagtaaat ... ttatgagcagGGGCTTACAGTGACTCGAGGGGGCTTCCTGGGGTACGGCAAGAGGTCGCAG
EST: gi|162166622|gb|FC343514.1|FC343514
EST:     TGCCATTGCTAGAGCGAAGCATTACTTGGCTATGACCTCAGGAGGCGTTG                         GGGCTTACAGTGACTCGAGGGGGCTTCCTGGGGTACGGCAAGAGGTCGCAG
genomic: TGCCATTGCTAGAGCGAAGCATTACTTGGCTATGACCTCAGGAGGCGTTGgtaagtaaat ... ttatgagcagGGGCTTACAGTGACTCGAGGGGGCTTCCTGGGGTACGGCAAGAGGTCGCAG
EST: gi|162191243|gb|FC367921.1|FC367921
EST:     TGCCATTGCTAGAGCGAAGCATTACTTGGCTATGACCTCAGGAGGCGTTG                         GGGCTTACAGTGACTCGAGGGGGCTTCCTGGGGTACGGCAAGAGGTCGCAG
genomic: TGCCATTGCTAGAGCGAAGCATTACTTGGCTATGACCTCAGGAGGCGTTGgtaagtaaat ... ttatgagcagGGGCTTACAGTGACTCGAGGGGGCTTCCTGGGGTACGGCAAGAGGTCGCAG
EST: gi|100388497|gb|BY952099.1|BY952099
EST:     TGCCATTGCTAGAGCGAAGCATTACTTGGCTATGACCTCAGGAGGCGTTG                         GGGCTTACAGTGACTCGAGGGGGCTTCCTGGGGTACGGCAAGAGGTCGCAG
genomic: TGCCATTGCTAGAGCGAAGCATTACTTGGCTATGACCTCAGGAGGCGTTGgtaagtaaat ... ttatgagcagGGGCTTACAGTGACTCGAGGGGGCTTCCTGGGGTACGGCAAGAGGTCGCAG
EST: gi|100436447|gb|BY961222.1|BY961222
EST:     TGCCATTGCTAGAGCGAAGCATTACTTGGCTATGACCTCAGGAGGCGTTG                         GGGCTTACAGTGACTCGAGGGGGCTTCCTGGGGTACGGCAAGAGGTCGCAG
genomic: TGCCATTGCTAGAGCGAAGCATTACTTGGCTATGACCTCAGGAGGCGTTGgtaagtaaat ... ttatgagcagGGGCTTACAGTGACTCGAGGGGGCTTCCTGGGGTACGGCAAGAGGTCGCAG
EST: gi|100357096|gb|BY983691.1|BY983691
EST:     TGCCATTGCTAGAGCGAAGCATTACTTGGCTATGACCTCAGGAGGCGTTG                         GGGCTTACAGTGACTCGAGGGGGCTTCCTGGGGTACGGCAAGAGGTCGCAG
genomic: TGCCATTGCTAGAGCGAAGCATTACTTGGCTATGACCTCAGGAGGCGTTGgtaagtaaat ... ttatgagcagGGGCTTACAGTGACTCGAGGGGGCTTCCTGGGGTACGGCAAGAGGTCGCAG
EST: gi|100384231|gb|BY969362.1|BY969362
EST:     TGCCATTGCTAGAGCGAAGCATTACTTGGCTATGACCTCAGGAGGCGTTG                         GGGCTTACAGTGACTCGAGAGGGCTTCCTGGGGTACGGCAAGAGGTCGCAG
genomic: TGCCATTGCTAGAGCGAAGCATTACTTGGCTATGACCTCAGGAGGCGTTGgtaagtaaat ... ttatgagcagGGGCTTACAGTGACTCGAGGGGGCTTCCTGGGGTACGGCAAGAGGTCGCAG
EST: gi|100412565|gb|BY974797.1|BY974797
EST:     TGCCATTGCTAGAGCGAAGCATTACTTGGCTATGACCTCAGGAGGCGTTG                         GGGCTTACAGTGACTCGAGGGGGCTTCCTGGGGTACGGCAAGAGGTCGCAG
genomic: TGCCATTGCTAGAGCGAAGCATTACTTGGCTATGACCTCAGGAGGCGTTGgtaagtaaat ... ttatgagcagGGGCTTACAGTGACTCGAGGGGGCTTCCTGGGGTACGGCAAGAGGTCGCAG
EST: gi|162152416|gb|FC327979.1|FC327979
EST:     TGCCATTGCTAGAGCGAAGCATTACTTGGCTATGACCTCAGGAGGCGTTG                         GGGCTTACAGTGACTCGAGGGGGCTTCCTGGGGTACGGCAAGAGGTCGCAG
genomic: TGCCATTGCTAGAGCGAAGCATTACTTGGCTATGACCTCAGGAGGCGTTGgtaagtaaat ... ttatgagcagGGGCTTACAGTGACTCGAGGGGGCTTCCTGGGGTACGGCAAGAGGTCGCAG
EST: gi|100446806|gb|CJ971105.1|CJ971105
EST:     TGCCATTGCTAGAGCGAAGCATTACTTGGCTATGACCTCAGGAGGCGTTG                         GGGCTTACAGTGACTCGAGGGGGCTTCCTGGGGTACGGCAAGAGGTCGCAG
genomic: TGCCATTGCTAGAGCGAAGCATTACTTGGCTATGACCTCAGGAGGCGTTGgtaagtaaat ... ttatgagcagGGGCTTACAGTGACTCGAGGGGGCTTCCTGGGGTACGGCAAGAGGTCGCAG
EST: gi|100384129|gb|BY950515.1|BY950515
EST:     TGCCATTGCTAGAGCGAAGCATTACTTGGCTATGACCTCAGGAGGCGTTG                         GGGCTTACAGTGACTCGAGGGGGCTTCCTGGGGTACGGCAAGAGGTCGCAG
genomic: TGCCATTGCTAGAGCGAAGCATTACTTGGCTATGACCTCAGGAGGCGTTGgtaagtaaat ... ttatgagcagGGGCTTACAGTGACTCGAGGGGGCTTCCTGGGGTACGGCAAGAGGTCGCAG
EST: gi|162187053|gb|FC362835.1|FC362835
EST:     TGCCATTGCTAGAGCGAAGCATTACTTGGCTATGACCTCAGGAGGCGTTG                         GGGCTTACAGTGACTCGAGGGGGCTTCCTGGGGTACGGCAAGAGGTCGCAG
genomic: TGCCATTGCTAGAGCGAAGCATTACTTGGCTATGACCTCAGGAGGCGTTGgtaagtaaat ... ttatgagcagGGGCTTACAGTGACTCGAGGGGGCTTCCTGGGGTACGGCAAGAGGTCGCAG
EST: gi|100386709|gb|BY970250.1|BY970250
EST:     TGCCATTGCTAGAGCGAAGCATTACTTGGCTATGACCTCAGGAGGCGTTG                         GGGCTTACAGTGACTCGAGGGGGCTTCCTGGGGTACGGCAAGAGGTCGCAG
genomic: TGCCATTGCTAGAGCGAAGCATTACTTGGCTATGACCTCAGGAGGCGTTGgtaagtaaat ... ttatgagcagGGGCTTACAGTGACTCGAGGGGGCTTCCTGGGGTACGGCAAGAGGTCGCAG
EST: gi|162189527|gb|FC365749.1|FC365749
EST:     TGCCATTGCTAGAGCGAAGCATTACTTGGCTATGACCTCAGGAGGCGTTG                         GGGCTTACAGTGACTCGAGGGGGCTTCCTGGGGTACGGCAAGAGGTCGCAG
genomic: TGCCATTGCTAGAGCGAAGCATTACTTGGCTATGACCTCAGGAGGCGTTGgtaagtaaat ... ttatgagcagGGGCTTACAGTGACTCGAGGGGGCTTCCTGGGGTACGGCAAGAGGTCGCAG
EST: gi|100388392|gb|BY951994.1|BY951994
EST:     TGCCATTGCTAGAGCGAAGCATTACTTGGCTATGACCTCAGGAGGCGTTG                         GGGCTTACAGTGACTCGAGGGGGCTTCCTGGGGTACGGCAAGAGGTCGCAG
genomic: TGCCATTGCTAGAGCGAAGCATTACTTGGCTATGACCTCAGGAGGCGTTGgtaagtaaat ... ttatgagcagGGGCTTACAGTGACTCGAGGGGGCTTCCTGGGGTACGGCAAGAGGTCGCAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 34 (upstream exon), 35 (downstream exon)
Score: 41

GCACCCTTTCTTATGGACGATCCACACGTGGGATTACTGTTTCCTGAAGATGCCATTGCTAGAGCGAAGCATTACTTGGCTATGACCTCAGGAGGCGTTGgtaagtaaat ... ttatgagcagGGGCTTACAGTGACTCGAGGGGGCTTCCTGGGGTACGGCAAGAGGTCGCAGAATTCATCCTGGAGCGTGATGGATATCCCAG




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