1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GGTGCTCGTTGGGCTTATTTTCGGATGGCTGGTTGGGGTCGCACTCATCTGTGGGTTAAAAGTTATGATGGACAGACGGAGCAGGAAGAGAACAAAGAAGgtttcacctctcagtgccctacatcttgtcgaaagtctgtctcatttttcgtgcttctgttgctatgagaattcctatttgttatgagtagaaatgttag...
species | Physcomitrella patens |
transcript | PP1S62_94V6.3 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TTGGGTTAAAAGTTATGATGGACAGACGGAGCAGGAAGAGAACAAAGAAG GTTGCTGCGATTGAGCTATTCAACCTCATAGATGAAGTGGAACTCAAGAAGEST: gi|162150866|gb|FC327346.1|FC327346
genomic: GTGGGTTAAAAGTTATGATGGACAGACGGAGCAGGAAGAGAACAAAGAAGgtttcacctc ... cggtgtccagGTTGCTGCGATTGAGCTATTCAACCTCATAGATGAAGTGGAACTCAAGAAG
EST: TTGGGTTAAAAGTTATGATGGACAGACGGAGCAGGAAGAGAACAAAGAAG GTTGCTGCGATTGAGCTATTCAACCTCATAGATGAAGTGGAACTCAAGAAGEST: gi|208383889|gb|DC915186.1|DC915186
genomic: GTGGGTTAAAAGTTATGATGGACAGACGGAGCAGGAAGAGAACAAAGAAGgtttcacctc ... cggtgtccagGTTGCTGCGATTGAGCTATTCAACCTCATAGATGAAGTGGAACTCAAGAAG
EST: GTGGGTTAAAAGTTATGATGGACAGACGGAGCAGGAAGAGAACAAAGAAG GTTGCTGCGATTGAGCTATTCAACCTCATAGATGAAGTGGAACTCAAGAAGEST: gi|162179908|gb|FC355979.1|FC355979
genomic: GTGGGTTAAAAGTTATGATGGACAGACGGAGCAGGAAGAGAACAAAGAAGgtttcacctc ... cggtgtccagGTTGCTGCGATTGAGCTATTCAACCTCATAGATGAAGTGGAACTCAAGAAG
EST: TTGGGTTAAAAGTTATGATGGACAGACGGAGCAGGAAGAGAACAAAGAAG GTTGCTGCGATTGAGCTATTCAACCTCATAGATGAAGTGGAACTCAAGAAG
genomic: GTGGGTTAAAAGTTATGATGGACAGACGGAGCAGGAAGAGAACAAAGAAGgtttcacctc ... cggtgtccagGTTGCTGCGATTGAGCTATTCAACCTCATAGATGAAGTGGAACTCAAGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTGCTCGTTGGGCTTATTTTCGGATGGCTGGTTGGGGTCGCACTCATCTGTGGGTTAAAAGTTATGATGGACAGACGGAGCAGGAAGAGAACAAAGAAGgtttcacctctcagtgccctacatcttgtcgaaagtctgtctcatttttcgtgcttctgttgctatgagaattcctatttgttatgagtagaaatgttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG