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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGCATTGGGACGGGCTATCTTTCTGCATTCCCATCTGAATTCTTTGATCGTTTCGAAGCCATTGAGTATGTTTGGGCGCCATACTATACAATACACAAGgtacagacgattacttcaaggcattggatccgtcctggtacatcatttatgttgaattctgggagctgtgatgcagcgatgtatttcacactggtgtgca...

Basic information

species Physcomitrella patens
transcript PP1S60_268V6.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S60_268V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GLYMA11G14000.1 (Glycine max), 5'ss of exon 3
GAGCATTGGGACGGGCTATCTTTCTGCATTCCCATCTGAATTCTTTGATCGTTTCGAAGCCATTGAGTATGTTTGGGCGCCATACTATACAATACACAAGgtacagacga--ttacttcaaggcattggatccgtcctggtacatcatttatgttgaattctgggagctgtgatgcagcgatgtatttcacactggtgtgca
||  ||||| || || ||||| ||||| || |||||||| || |||||||| || ||||| ||| |  | |||||||| ||||||||||| || |||||||||||  | |   |   |   |  | |  |   |   | | || | | |  ||| | |||        |  | |    |                       
GAAAATTGGAACTGGATATCTATCTGCCTTTCCATCTGAGTTGTTTGATCGATTTGAAGCTATTCAAGAAGTTTGGGCTCCATACTATACCATTCACAAGgtacaatcaaaagtggattttgataatacaagtgcttttg-accttaatattgtgggatttcaactaattagttatgacag---------------------

upper sequence: PP1S60_268V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: EFJ24537 (Selaginella moellendorffii), 5'ss of exon 2
GAGCATTGGGACGGGCTATCTTTCTGCATTCCCATCTGAATTCTTTGATCGTTTCGAAGCCATTGAGTATGTTTGGGCGCCATACTATACAATACACAAGgtacagacgattacttcaaggcattggatccgtcctggtacatcatttatgttgaattctgggagctgtgatgcagcgatgtatttcacactggtgtgca
 |  ||||| || || ||  | ||||| || ||| |    || |||||||||||||||||  | |||| ||||||||| |||||||| ||||| ||||||||| ||| | || |||       ||   |      |  |  | | |  |    | | ||  |    | || | |   ||                     
AAAGATTGGAACTGGATACTTGTCTGCTTTTCCAACCAGCTTGTTTGATCGTTTCGAAGCTCTGGAGTCTGTTTGGGCACCATACTACACAATTCACAAGgtataga-gctttcttgtttttttttttttttcttttcttgaacgtccaa--cgtagtcctgtttttttgttcccttgaaag------------------

upper sequence: PP1S60_268V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: EFJ08090 (Selaginella moellendorffii), 5'ss of exon 2
GAGCATTGGGACGGGCTATCTTTCTGCATTCCCATCTGAATTCTTTGATCGTTTCGAAGCCATTGAGTATGTTTGGGCGCCATACTATACAATACACAAGgtacagacgattacttcaaggcattggatccgtcctggtacatcatttatgttgaattctgggagctgtgatgcagcgatgtatttcacactggtgtgca
 |  ||||| || || ||  | ||||| || ||| |    || |||||||||||||||||  | |||| ||||||||| |||||||| ||||| ||||||||| |||   ||  |        ||      |  ||   |    | |  ||||   ||||      ||  |                             
AAAGATTGGAACTGGATACTTGTCTGCTTTTCCAACCAGCTTGTTTGATCGTTTCGAAGCTCTGGAGTCTGTTTGGGCACCATACTACACAATTCACAAGgtatagagctttcttgtgttttttttttcttgaacttccaacgtagtcctgtttttttctttcccttgaaag----------------------------

upper sequence: PP1S60_268V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: EFJ08149 (Selaginella moellendorffii), 5'ss of exon 2
GAGCATTGGGACGGGCTATCTTTCTGCATTCCCATCTGAATTCTTTGATCGTTTCGAAGCCATTGAGTATGTTTGGGCGCCATACTATACAATACACAAGgtacagacgattacttcaaggcattggatccgtcctggtacatcatttatgttgaattctgggagctgtgatgcagcgatgtatttcacactggtgtgca
 |  ||||| || || ||  | ||||| || ||| |    || |||||||||||||||||  | |||| ||||||||| |||||||| || || ||||||||| ||| | || |||       ||   |   |||| | || ||    | || |   | ||     | || | |   ||                     
AAAGATTGGAACTGGATACTTGTCTGCTTTTCCAACCAGCTTGTTTGATCGTTTCGAAGCTCTGGAGTCTGTTTGGGCACCATACTACACGATTCACAAGgtataga-gctttctt------gttttttttttccttgaacttc--caacgtagtcctgtgttttttttgttcccttgaaag------------------