Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGAAAACTGGGGCTGGTGCTTCTCCCCCATCTTCTTCAGGAACCACCCAGgtacacttttcggacgccttattggtgcaccatcgattttatgtctcttgatgacttaggaattgaccatcaaaactgtcggctagggatttttattgagttatatgatttggtcatgtttggaatag

Basic information

species Physcomitrella patens
transcript PP1S58_148V6.4
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67718017|gb|BJ968276.1|BJ968276
EST:     CGAAAACTGGGGCTGGTGCTTCTCCCCCATCTTCTTCAGGAACCACCCAG                         GCACCTGCTCCCGTGGCCGCTGCTACCCCTCCTGCACCTGCGCGGAGTCCT
genomic: CGAAAACTGGGGCTGGTGCTTCTCCCCCATCTTCTTCAGGAACCACCCAGgtacactttt ... tttggaatagGCACCTGCTCCCGTGGCCGCTGCTACCCCTCCTGCACCTGCGCGGAGTCCT
EST: gi|162200956|gb|FC377359.1|FC377359
EST:     CGAAAACTGGGGCTGGTGCTTCTCCCCCATCTTCTTCAGGAACCACCCAG                         GCACCTGCTCCCGTGGCCGCTGCTACCCCTCCTGCACCTGCGCGGAGTCCT
genomic: CGAAAACTGGGGCTGGTGCTTCTCCCCCATCTTCTTCAGGAACCACCCAGgtacactttt ... tttggaatagGCACCTGCTCCCGTGGCCGCTGCTACCCCTCCTGCACCTGCGCGGAGTCCT
EST: gi|208368341|gb|DC935682.1|DC935682
EST:     CGAAAACTGGGGCTGGTGCTTCTCCCCCATCTTCTTCAGGAACCACCCAG                         GCACCTGCTCCCGTGGCCGCTGCTACCCCTCCTGCACCTGCGCGGAGTCCT
genomic: CGAAAACTGGGGCTGGTGCTTCTCCCCCATCTTCTTCAGGAACCACCCAGgtacactttt ... tttggaatagGCACCTGCTCCCGTGGCCGCTGCTACCCCTCCTGCACCTGCGCGGAGTCCT
EST: gi|100371545|gb|BY968032.1|BY968032
EST:     CGAAAACTGGGGCTGGTGCTTCTCCCCCATCTTCTTCAGGAACCACCCAG                         GCACCTGCTCCCGTGGCCGCTGCTACCCCTCCTGCACCTGCGCGGAGTCCT
genomic: CGAAAACTGGGGCTGGTGCTTCTCCCCCATCTTCTTCAGGAACCACCCAGgtacactttt ... tttggaatagGCACCTGCTCCCGTGGCCGCTGCTACCCCTCCTGCACCTGCGCGGAGTCCT
EST: gi|67718144|gb|BJ968403.1|BJ968403
EST:     CGAAAACTGGGGCTGGTGCTTCTCCCCCATCTTCTTCAGGAACCACCCAG                         GCACCTGCTCCCGTGGCCGCTGCTACCCCTCCTGCACCTGCGCGGAGTCCT
genomic: CGAAAACTGGGGCTGGTGCTTCTCCCCCATCTTCTTCAGGAACCACCCAGgtacactttt ... tttggaatagGCACCTGCTCCCGTGGCCGCTGCTACCCCTCCTGCACCTGCGCGGAGTCCT
EST: gi|67718550|gb|BJ968809.1|BJ968809
EST:     CGAAAACTGGGGCTGGTGCTTCTCCCCCATCTTCTTCAGGAACCACCCAG                         GCACCTGCTCCCGTGGCCGCTGCTACCCCTCCTGCACCTGCGCGGAGTCCT
genomic: CGAAAACTGGGGCTGGTGCTTCTCCCCCATCTTCTTCAGGAACCACCCAGgtacactttt ... tttggaatagGCACCTGCTCCCGTGGCCGCTGCTACCCCTCCTGCACCTGCGCGGAGTCCT
EST: gi|67702167|gb|BJ962400.1|BJ962400
EST:     CGAAAACTGGGGCTGGTGCTTCTCCCCCATCTTCTTCAGGAACCACCCAG                         GCACCTGCTCCCGTGGCCGCTGCTACCCCTCCTGC
genomic: CGAAAACTGGGGCTGGTGCTTCTCCCCCATCTTCTTCAGGAACCACCCAGgtacactttt ... tttggaatagGCACCTGCTCCCGTGGCCGCTGCTACCCCTCCTGC
EST: gi|100369047|gb|BY984997.1|BY984997
EST:     CGAAAACTGGGGCTGGTGCTTCTCCCCCATCTTCTTCAGGAACCACCCAG                         GCACCTGCTCCCGTGGCCGCTGCTACCCCTCCTGCACCTGCGCGGAGTCCT
genomic: CGAAAACTGGGGCTGGTGCTTCTCCCCCATCTTCTTCAGGAACCACCCAGgtacactttt ... tttggaatagGCACCTGCTCCCGTGGCCGCTGCTACCCCTCCTGCACCTGCGCGGAGTCCT
EST: gi|100439827|gb|BY980259.1|BY980259
EST:     CGAAAACTGGGGCTGGTGCTTCTCCCCCATCTTCTTCAGGAACCACCCAG                         GCACCTGCTCCCGTGGCCGCTGCTACCCCTCCTGCACCTGCGCGGAGTCCT
genomic: CGAAAACTGGGGCTGGTGCTTCTCCCCCATCTTCTTCAGGAACCACCCAGgtacactttt ... tttggaatagGCACCTGCTCCCGTGGCCGCTGCTACCCCTCCTGCACCTGCGCGGAGTCCT
EST: gi|18342937|gb|BJ174973.1|BJ174973
EST:     CGAAAACTGGGGCTGGTGCTTCTCCCCCATCTTCTTCAGGAACCACCCAG                         GCACCTGCTCCCGTGGCCGCTGCTACCCCTCCTGCACCTGCGCGGAGTCCT
genomic: CGAAAACTGGGGCTGGTGCTTCTCCCCCATCTTCTTCAGGAACCACCCAGgtacactttt ... tttggaatagGCACCTGCTCCCGTGGCCGCTGCTACCCCTCCTGCACCTGCGCGGAGTCCT
EST: gi|67716636|gb|BJ966896.1|BJ966896
EST:     CGAAAACTGGGGCTGGTGCTTCTCCCCCATCTTCTTCAGGAACCACCCAG                         GCACCTGCTCCCGTGGCCGCTGCTACCCCTCCTGCACCTGCGCGGAGTCCT
genomic: CGAAAACTGGGGCTGGTGCTTCTCCCCCATCTTCTTCAGGAACCACCCAGgtacactttt ... tttggaatagGCACCTGCTCCCGTGGCCGCTGCTACCCCTCCTGCACCTGCGCGGAGTCCT
EST: gi|67718192|gb|BJ968451.1|BJ968451
EST:     CGAAAACTGGGGCTGGTGCTTCTCCCCCATCTTCTTCAGGAACCACCCAG                         GCACCTGCTCCCGTGGCCGCTGCTACCCCTCCTGCACCTGCGCGGAGTCCT
genomic: CGAAAACTGGGGCTGGTGCTTCTCCCCCATCTTCTTCAGGAACCACCCAGgtacactttt ... tttggaatagGCACCTGCTCCCGTGGCCGCTGCTACCCCTCCTGCACCTGCGCGGAGTCCT
EST: gi|67702885|gb|BJ963118.1|BJ963118
EST:     CGAAAACTGGGGCTGGTGCTTCTCCCCCATCTTCTTCAGGAACCACCCAG                         GCACCTGCTCCCGTGGCCGCTGCTACCCCTCCTGCACCTGCGCGGAGTCCT
genomic: CGAAAACTGGGGCTGGTGCTTCTCCCCCATCTTCTTCAGGAACCACCCAGgtacactttt ... tttggaatagGCACCTGCTCCCGTGGCCGCTGCTACCCCTCCTGCACCTGCGCGGAGTCCT
EST: gi|162158680|gb|FC335047.1|FC335047
EST:     CGAAAACTGGGGCTGGTGCTTCTCCCCCATCTTCTTCAGGAACCACCCAG                         GCACCTGCTCCCGTGGCCGCTGCTACCCCTCCTGCACCTGCGCGGAGTCCT
genomic: CGAAAACTGGGGCTGGTGCTTCTCCCCCATCTTCTTCAGGAACCACCCAGgtacactttt ... tttggaatagGCACCTGCTCCCGTGGCCGCTGCTACCCCTCCTGCACCTGCGCGGAGTCCT
EST: gi|162261438|gb|FC438274.1|FC438274
EST:     CGAAAACTGGGGCTGGTGCTTCTCCCCCATCTTCTTCAGGAACCACCCAG                         GCACCTGCTCCCGTGGCCGCTGCTACCCCTCCTGCACCTGCGCGGAGTCCT
genomic: CGAAAACTGGGGCTGGTGCTTCTCCCCCATCTTCTTCAGGAACCACCCAGgtacactttt ... tttggaatagGCACCTGCTCCCGTGGCCGCTGCTACCCCTCCTGCACCTGCGCGGAGTCCT
EST: gi|67717915|gb|BJ968174.1|BJ968174
EST:     CGAAAACTGGGGCTGGTGCTTCTCCCCCATCTTCTTCAGGAACCACCCAG                         GCACCTGCTCCCGTGGCCGCTGCTACCCCTCCTGCACCTGCGCGGAGTCCT
genomic: CGAAAACTGGGGCTGGTGCTTCTCCCCCATCTTCTTCAGGAACCACCCAGgtacactttt ... tttggaatagGCACCTGCTCCCGTGGCCGCTGCTACCCCTCCTGCACCTGCGCGGAGTCCT
EST: gi|100440952|gb|BY962440.1|BY962440
EST:     CGAAAACTGGGGCTGGTGCTTCTCCCCCATCTTCTTCAGGAACCACCCAG                         GCACCTGCTCCCGTGGCCGCTGCTACCCCTCCTGCACCTGCGCGGAGTCCT
genomic: CGAAAACTGGGGCTGGTGCTTCTCCCCCATCTTCTTCAGGAACCACCCAGgtacactttt ... tttggaatagGCACCTGCTCCCGTGGCCGCTGCTACCCCTCCTGCACCTGCGCGGAGTCCT
EST: gi|162150756|gb|FC327028.1|FC327028
EST:     CGAAAACTGGGGCTGGTGCTTCTCCCCCATCTTCTTCAGGAACCACCCAG                         GCACCTGCTCCCGTGGCCGCTGCTACCCCTCCTGCACCTGCGCGGAGTCCT
genomic: CGAAAACTGGGGCTGGTGCTTCTCCCCCATCTTCTTCAGGAACCACCCAGgtacactttt ... tttggaatagGCACCTGCTCCCGTGGCCGCTGCTACCCCTCCTGCACCTGCGCGGAGTCCT
EST: gi|208390566|gb|DC937498.1|DC937498
EST:     CGAAAACTGGGGCTGGTGCTTCTCCCCCATCTTCTTCAGGAACCACCCAG                         GCACCTGCTCCCGTGGCCGCTGCTACCCCTCCTGCACCTGCGCGGAGTCCT
genomic: CGAAAACTGGGGCTGGTGCTTCTCCCCCATCTTCTTCAGGAACCACCCAGgtacactttt ... tttggaatagGCACCTGCTCCCGTGGCCGCTGCTACCCCTCCTGCACCTGCGCGGAGTCCT
EST: gi|208389212|gb|DC933240.1|DC933240
EST:     CGAAAACTGGGGCTGGTGCTTCTCCCCCATCTTCTTCAGGAACCACCCAG                         GCACCTGCTCCCGTGGCCGCTGCTACCCCTCCTGCACCTGCGCGGAGTCCT
genomic: CGAAAACTGGGGCTGGTGCTTCTCCCCCATCTTCTTCAGGAACCACCCAGgtacactttt ... tttggaatagGCACCTGCTCCCGTGGCCGCTGCTACCCCTCCTGCACCTGCGCGGAGTCCT
EST: gi|18367483|gb|BJ199566.1|BJ199566
EST:     CGAAAACTGGGGCTGGTGCTTCTCCCCCATCTTCTTCAGGAACCACCCAG                         GCACCTGCTCCCGTGGCCGCTGCTACCCCTCCTGCACCTGCGCGGAGTCCT
genomic: CGAAAACTGGGGCTGGTGCTTCTCCCCCATCTTCTTCAGGAACCACCCAGgtacactttt ... tttggaatagGCACCTGCTCCCGTGGCCGCTGCTACCCCTCCTGCACCTGCGCGGAGTCCT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 34 (upstream exon), 29 (downstream exon)
Score: 6

GCGAAAACTGGGGCTGGTGCTTCTCCCCCATCTTCTTCAGGAACCACCCAGgtacactttt ... tttggaatagGCACCTGCTCCCGTGGCCGCTGCTACCCCTCCTGCACCTGCGCGGAGTCCTGCCACTCCATCACCTCCGACCCCGGCCACACCTGCTCC




<











<


<