1 5' 3' | 2 5' 3' | 3 5' 3' |
GAGTGGAGCACATGAGTGGAGACATGTTTGAGTCCATCCCATCTGGAGGCGATGCCATCTTCTTGAAGgtcagtcctccaccatctcatgtccttccaatatattatttcataggagtctgacatattttactacgcaataaagtcattattttttccatacttaaat...
species | Physcomitrella patens |
transcript | PP1S56_71V6.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GAGACATGTTTGAGTCCATCCCATCTGGAGGCGATGCCATCTTCTTGAAG TACATACTGCATGACTGGGACGACGAAAGCTGTATCANACTTTTGAAGAACEST: gi|37843419|gb|BJ601427.1|BJ601427
genomic: GAGACATGTTTGAGTCCATCCCATCTGGAGGCGATGCCATCTTCTTGAAGgtcagtcctc ... ttctggacagTACATACTGCATGACTGGGACGACGAAAGCTGTATCAAACTTTTGAAGAAC
EST: GGCGATGCCATCTTCTTGAAG TACATACTGCATGACTGGGACGACGAAAGCTGTATCAAACTTTTGAAGAACEST: gi|18334012|gb|BJ166028.1|BJ166028
genomic: GGCGATGCCATCTTCTTGAAGgtcagtcctc ... ttctggacagTACATACTGCATGACTGGGACGACGAAAGCTGTATCAAACTTTTGAAGAAC
EST: GCGATGCCATCTTCTTGAAG TACATACTGCATGACTGGGACGACGAAAGCTGTATCAAACTTTTGAAGAACEST: gi|162153286|gb|FC329068.1|FC329068
genomic: GCGATGCCATCTTCTTGAAGgtcagtcctc ... ttctggacagTACATACTGCATGACTGGGACGACGAAAGCTGTATCAAACTTTTGAAGAAC
EST: GAGACATGTTTGAGTCCATCCCATCTGGAGGCGATGCCATCTTCTTGAAG TACATACTGCATGACTGGGACGACGAAAGCTGTATCAAACTTTTGAAGAACEST: gi|162259570|gb|FC435497.1|FC435497
genomic: GAGACATGTTTGAGTCCATCCCATCTGGAGGCGATGCCATCTTCTTGAAGgtcagtcctc ... ttctggacagTACATACTGCATGACTGGGACGACGAAAGCTGTATCAAACTTTTGAAGAAC
EST: GAGACATGTTTGAGTCCATCCCATCTGGAGGCGATGCCATCTTCTTGAAG TACATACTGCATGACTGGGACGACGAAAGCTGTATCAAACTTTTGAAGAACEST: gi|37835723|gb|BJ593735.1|BJ593735
genomic: GAGACATGTTTGAGTCCATCCCATCTGGAGGCGATGCCATCTTCTTGAAGgtcagtcctc ... ttctggacagTACATACTGCATGACTGGGACGACGAAAGCTGTATCAAACTTTTGAAGAAC
EST: AGGCGATGCCATNTTCTTGAAG TACATACTGCATGACTGGGACGACGAAAGCTGTATCAAACTTTTGAAGAACEST: gi|162244129|gb|FC419806.1|FC419806
genomic: AGGCGATGCCATCTTCTTGAAGgtcagtcctc ... ttctggacagTACATACTGCATGACTGGGACGACGAAAGCTGTATCAAACTTTTGAAGAAC
EST: GAGACATGTTTGAGTCCATCCCATCTGGAGGCGATGCCATCTTCTTGAAG TACATACTGCATGACTGGGACGACGAAAGCTGTATCAAACTTTTGAAGAACEST: gi|37837845|gb|BJ595853.1|BJ595853
genomic: GAGACATGTTTGAGTCCATCCCATCTGGAGGCGATGCCATCTTCTTGAAGgtcagtcctc ... ttctggacagTACATACTGCATGACTGGGACGACGAAAGCTGTATCAAACTTTTGAAGAAC
EST: TGGAGGCGATGCCATCTTCTTGAAG TACATACTGCATGACTGGGACGACGAAAGCTGTATCAAACTTTTGAAGAACEST: gi|162172204|gb|FC348769.1|FC348769
genomic: TGGAGGCGATGCCATCTTCTTGAAGgtcagtcctc ... ttctggacagTACATACTGCATGACTGGGACGACGAAAGCTGTATCAAACTTTTGAAGAAC
EST: GAGACATGTTTGAGTCCATCCCATCTGGAGGCGATGCCATCTTCTTGAAG TACATACTGCATGACTGGGACGACGAAAGCTGTATCAAACTTTTGAAGAACEST: gi|37843068|gb|BJ601076.1|BJ601076
genomic: GAGACATGTTTGAGTCCATCCCATCTGGAGGCGATGCCATCTTCTTGAAGgtcagtcctc ... ttctggacagTACATACTGCATGACTGGGACGACGAAAGCTGTATCAAACTTTTGAAGAAC
EST: GAGACATGTTTGAGTCCATCCCATCTGGAGGCGATGCCATCTTCTTGAAG TACATACTGCATGACTGGGACGACGAAAGCTGTATCAAACTTTTGAAGAAC
genomic: GAGACATGTTTGAGTCCATCCCATCTGGAGGCGATGCCATCTTCTTGAAGgtcagtcctc ... ttctggacagTACATACTGCATGACTGGGACGACGAAAGCTGTATCAAACTTTTGAAGAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGTGGAGCACATGAGTGGAGACATGTTTGAGTCCATCCCATCTGGAGGCGATGCCATCTTCTTGAAGgtcagtcctccaccatctcatgtccttccaatatattatttcataggagtctgacatattttactacgcaataaagtcattattttttccatacttaaat
- - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG