1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GTCGATGGAATGGACTGCTTGGCTGTGAAGCAGGCCGTAAAATTCGCCAAGGAGCATGCTTTGAAGAATGGTCCCATGgtaagttctgctggaaaatttgaaaatcattacgtcaatgctcgtcttattctccaggcttttctcaatggagtgttacgtgccgtcagctacgcactttgtttttgagtgatttctgaaaggtgttttgtggaatgaag
species | Physcomitrella patens |
transcript | PP1S56_222V6.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AGCAGGCCGTAAAATTCGCCAAGGAGCATGCTTTGAAGAATGGTCCCATG GTTTTGGAGATGGACACTTATAGGTATCATGGTCACTCTATGTCTGACCCAEST: gi|162269474|gb|FC445342.1|FC445342
genomic: AGCAGGCCGTAAAATTCGCCAAGGAGCATGCTTTGAAGAATGGTCCCATGgtaagttctg ... tggaatgaagGTTTTGGAGATGGACACTTATAGGTATCATGGTCACTCTATGTCTGACCCA
EST: AGCAGGCCGTAAAATTCGCCAAGGAGCATGCTTTGAAGAATGGTCCCATG GTTTTGGAGATGGACACTTATAGGTATCATGGTCACTCTATGTCTGACCCAEST: gi|208344991|gb|DC925401.1|DC925401
genomic: AGCAGGCCGTAAAATTCGCCAAGGAGCATGCTTTGAAGAATGGTCCCATGgtaagttctg ... tggaatgaagGTTTTGGAGATGGACACTTATAGGTATCATGGTCACTCTATGTCTGACCCA
EST: AGCAGGCCGTAAAATTCGCCAAGGAGCATGCTTTGAAGAATGGTCCCATG GTTTTGGAGATGGACACTTATAGGTATCATGGTCACTCTATGTCTGACCCAEST: gi|162269475|gb|FC445343.1|FC445343
genomic: AGCAGGCCGTAAAATTCGCCAAGGAGCATGCTTTGAAGAATGGTCCCATGgtaagttctg ... tggaatgaagGTTTTGGAGATGGACACTTATAGGTATCATGGTCACTCTATGTCTGACCCA
EST: AGCAGGCCGTAAAATTCGCCAAGGAGCATGCTTTGAAGAATGGTCCCATG GTTTTGGAGATGGACACTTATAGGTATCATGGTCACTCTATGTCTGACCCA
genomic: AGCAGGCCGTAAAATTCGCCAAGGAGCATGCTTTGAAGAATGGTCCCATGgtaagttctg ... tggaatgaagGTTTTGGAGATGGACACTTATAGGTATCATGGTCACTCTATGTCTGACCCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCGATGGAATGGACTGCTTGGCTGTGAAGCAGGCCGTAAAATTCGCCAAGGAGCATGCTTTGAAGAATGGTCCCATGgtaagttctgctggaaaatttgaaaatcattacgtcaatgctcgtcttattctccaggcttttctcaatggagtgttacgtgccgtcagctacgcactttgtttttgagtgatttctgaaaggtgttttgtggaatgaag
- - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA