1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CATTGGTCCTTCGGTGAACACATCAAGGAGCAAATCATGATGATCGATTCTCTATGCGAATGGAAGAATGCAGCAAGTCGTGAGGTTCTAGTTCTTGGAGgtaagggtctctagctcttcaatctccactagctctggtaagtaggaagtagggggatcctacctctactgttgagttcttatttgaaacagtttatcta...
species | Physcomitrella patens |
transcript | PP1S55_27V6.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TCTATGCGAATGGAAGAATGCAGCAAGTCGTGAGGTTCTAGTTCTTGGAG GTGATGTTCATTGTGGAGGTCACTCCGACATCATAAAAAACCACGAGATTTEST: gi|37842835|gb|BJ600843.1|BJ600843
genomic: TCTATGCGAATGGAAGAATGCAGCAAGTCGTGAGGTTCTAGTTCTTGGAGgtaagggtct ... attactacagGTGATGTTCATTGTGGAGGTCACTCCGACATCATAAAAAACCACGAGATTT
EST: TCTATGCGAATGGAAGAATGCAGCAAGTCGTGAGGTTCTAGTTCTTGGAG GTGATGTTCATTGTGGAGGTCACTCCGNCATCATAAAAAACCNCGAGATTT
genomic: TCTATGCGAATGGAAGAATGCAGCAAGTCGTGAGGTTCTAGTTCTTGGAGgtaagggtct ... attactacagGTGATGTTCATTGTGGAGGTCACTCCGACATCATAAAAAACCACGAGATTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CATTGGTCCTTCGGTGAACACATCAAGGAGCAAATCATGATGATCGATTCTCTATGCGAATGGAAGAATGCAGCAAGTCGTGAGGTTCTAGTTCTTGGAGgtaagggtctctagctcttcaatctccactagctctggtaagtaggaagtagggggatcctacctctactgttgagttcttatttgaaacagtttatcta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG