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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCTGTTGTGCTTGATGCTACAGGCCATTCAAGACGGCTAGTACAGTATGATAAGCCATTCAATCCAGGCTATCAAATTGCTTACGGAATTGTTGCGGAAgtacgtgtcctggcgccctttgctccttcaattatacttcgtctctaagatgattgcaggggtaacatttttgtaacgtgattggtatttgaaaggcaga...

Basic information

species Physcomitrella patens
transcript PP1S55_202V6.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162195942|gb|FC372659.1|FC372659
EST:     ATAAGCCATTCAATCCAGGCTATCAAATTGCTTACGGAATTGTTGCGGAA                         GTAGATAGTCATCCTTTCGACGTCGACAAGATGCTATTCATGGACTGGCGA
genomic: ATAAGCCATTCAATCCAGGCTATCAAATTGCTTACGGAATTGTTGCGGAAgtacgtgtcc ... acattggcagGTAGATAGTCATCCTTTCGACGTCGACAAGATGCTATTCATGGACTGGCGA
EST: gi|162149863|gb|FC326186.1|FC326186
EST:     ATAAGCCATTCAATCCAGGCTATCAAATTGCTTACGGAATTGTTGCGGAA                         GTAGATAGTCATCCTTTCGACGTCGACAAGATGCTATTCATGGACTGGCGA
genomic: ATAAGCCATTCAATCCAGGCTATCAAATTGCTTACGGAATTGTTGCGGAAgtacgtgtcc ... acattggcagGTAGATAGTCATCCTTTCGACGTCGACAAGATGCTATTCATGGACTGGCGA
EST: gi|162158482|gb|FC334485.1|FC334485
EST:     ATAAGCCATTCAATCCAGGCTATCAAATTGCTTACGGAATTGTTGCGGAA                         GTAGATAGTCATCCTTTCGACGTCGACAAGATGCTATTCATGGACTGGCGA
genomic: ATAAGCCATTCAATCCAGGCTATCAAATTGCTTACGGAATTGTTGCGGAAgtacgtgtcc ... acattggcagGTAGATAGTCATCCTTTCGACGTCGACAAGATGCTATTCATGGACTGGCGA
EST: gi|162151822|gb|FC328068.1|FC328068
EST:     ATAAGCCATTCAATCCAGGCTATCAAATTGCTTACGGAATTGTTGCGGAA                         GTAGATAGTCATCCTTTCGACGT
genomic: ATAAGCCATTCAATCCAGGCTATCAAATTGCTTACGGAATTGTTGCGGAAgtacgtgtcc ... acattggcagGTAGATAGTCATCCTTTCGACGT
EST: gi|162252108|gb|FC428347.1|FC428347
EST:     ATAAGCCATTCAATCCAGGCTATCAAATTGCTTACGGAATTGTTGCGGAA                         GTAGATAGTCATCCTTTCGACGTCGACAAGATGCTATTCATGGACTGGCGA
genomic: ATAAGCCATTCAATCCAGGCTATCAAATTGCTTACGGAATTGTTGCGGAAgtacgtgtcc ... acattggcagGTAGATAGTCATCCTTTCGACGTCGACAAGATGCTATTCATGGACTGGCGA