1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TGGTGATTTCGACGACGATGACCAGCTGCTTAAGACCTACAGAAGCGCCACCGTCGGTGTGAATTCTCAATACTTTATTGCGGAGAACATCCAGTTTCGGgtaactaccttgcccttgttccaaaataaccttgtcaatttcctggacgacaagccatcctgtcgaaagaagaagtatgtttgtttgtaaatacttagatcatcatcatcgtgtgtgtag
species | Physcomitrella patens |
transcript | PP1S55_167V6.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CCGTCGGTGTGAATTCTCAATACTTTATTGCGGAGAACATCCAGTTTCGG AACACAGCACCCCAACCGCCTCCAGGTGCAGTCCTACGGCAAGCTGTGGCTEST: gi|208345559|gb|DC909249.1|DC909249
genomic: CCGTCGGTGTGAATTCTCAATACTTTATTGCGGAGAACATCCAGTTTCGGgtaactacct ... gtgtgtgtagAACACAGCACCCCAACCGCCTCCAGGTGCAGTCCTACGGCAAGCTGTGGCT
EST: CCGTCGGTGTGAATTCTCAATACTTTATTGCGGAGAACATCCAGTTTCGG AACACAGCACCCCAACCGCCTCCAGGTGCAGTCCTACGGCANGCTGTGGCTEST: gi|100400403|gb|BY954459.1|BY954459
genomic: CCGTCGGTGTGAATTCTCAATACTTTATTGCGGAGAACATCCAGTTTCGGgtaactacct ... gtgtgtgtagAACACAGCACCCCAACCGCCTCCAGGTGCAGTCCTACGGCAAGCTGTGGCT
EST: CCGTCGGTGTGAATTCTCAATACTTTATTGCGGAGAACATCCAGTTTCGG AACACAGCACCCCAACCGCCTCCAGGTGCAGTCCTACGGCAAGCTGTGGCTEST: gi|100428241|gb|BY977704.1|BY977704
genomic: CCGTCGGTGTGAATTCTCAATACTTTATTGCGGAGAACATCCAGTTTCGGgtaactacct ... gtgtgtgtagAACACAGCACCCCAACCGCCTCCAGGTGCAGTCCTACGGCAAGCTGTGGCT
EST: CCGTCGGTGTGAATTCTCAATACTTTATTGCGGAGAACATCCAGTTTCGG AACACAGCACCCCAACCGCCTCCAGGTGCAGTCCTACGGCAAGCTGTGGCTEST: gi|100445957|gb|CJ970256.1|CJ970256
genomic: CCGTCGGTGTGAATTCTCAATACTTTATTGCGGAGAACATCCAGTTTCGGgtaactacct ... gtgtgtgtagAACACAGCACCCCAACCGCCTCCAGGTGCAGTCCTACGGCAAGCTGTGGCT
EST: CCGTCGGTGTGAATTCTCAATACTTTATTGCGGAGAACATCCAGTTTCGG AACACAGCACCCCAACCGCCTCCAGGTGCAGTCCTACGGCAAGCTGTGGCTEST: gi|100373167|gb|BY949242.1|BY949242
genomic: CCGTCGGTGTGAATTCTCAATACTTTATTGCGGAGAACATCCAGTTTCGGgtaactacct ... gtgtgtgtagAACACAGCACCCCAACCGCCTCCAGGTGCAGTCCTACGGCAAGCTGTGGCT
EST: CCGTCGGTGTGAATTCTCAATACTTTATTGCGGAGAACATCCAGTTTCGG AACACAGCACCCCAACCGCCTCCAGGTGCAGTCCTACGGCAAGCTGTGGCTEST: gi|208348321|gb|DC905535.1|DC905535
genomic: CCGTCGGTGTGAATTCTCAATACTTTATTGCGGAGAACATCCAGTTTCGGgtaactacct ... gtgtgtgtagAACACAGCACCCCAACCGCCTCCAGGTGCAGTCCTACGGCAAGCTGTGGCT
EST: CCGTCGGTGTGAATTCTCAATACTTTATTGCGGAGAACATCCAGTTTCGG AACACAGCACCCCAACCGCCTCCAGGTGCAGTCCTACGGCANGCTGTGGCTEST: gi|100388354|gb|BY951956.1|BY951956
genomic: CCGTCGGTGTGAATTCTCAATACTTTATTGCGGAGAACATCCAGTTTCGGgtaactacct ... gtgtgtgtagAACACAGCACCCCAACCGCCTCCAGGTGCAGTCCTACGGCAAGCTGTGGCT
EST: CCGTCGGTGTGAATTCTCAATACTTTATTGCGGAGAACATCCAGTTTCGG AACACAGCACCCCAACCGCCTCCAGGTGCAGTCCTACGGCAAGCTGTGGCTEST: gi|208347552|gb|DC912825.1|DC912825
genomic: CCGTCGGTGTGAATTCTCAATACTTTATTGCGGAGAACATCCAGTTTCGGgtaactacct ... gtgtgtgtagAACACAGCACCCCAACCGCCTCCAGGTGCAGTCCTACGGCAAGCTGTGGCT
EST: CCGTCGGTGTGAATTCTCAATACTTTATTGCGGAGAACATCCAGTTTCGG AACACAGCACCCCAACEST: gi|100385841|gb|BY951035.1|BY951035
genomic: CCGTCGGTGTGAATTCTCAATACTTTATTGCGGAGAACATCCAGTTTCGGgtaactacct ... gtgtgtgtagAACACAGCACCCCAAC
EST: CCGTCGGTGTGAATTCTCAATACTTTATTGCGGAGAACATCCAGTTTCGG AACACAGCACCCCAACCGCCTCCAGGTGCAGTCCTACGGCAAGCTGTGGCTEST: gi|100387098|gb|BY951497.1|BY951497
genomic: CCGTCGGTGTGAATTCTCAATACTTTATTGCGGAGAACATCCAGTTTCGGgtaactacct ... gtgtgtgtagAACACAGCACCCCAACCGCCTCCAGGTGCAGTCCTACGGCAAGCTGTGGCT
EST: TCGGTGTGAATTTCTCA-TACTTTTATTGCGGAGAACATCCAGTTTTCGG AACACAGCACCCCCACCGCCTCCAGGTGCAGTCCTACGGCAAGCTGTGGEST: gi|208345507|gb|DC909197.1|DC909197
genomic: TCGGTGTGAATT-CTCAATACTTT-ATTGCGGAGAACATCCAGTTT-CGGgtaactacct ... gtgtgtgtagAACACAGCACCCCAACCGCCTCCAGGTGCAGTCCTACGGCAAGCTGTGG
EST: CCGTCGGTGTGAATTCTCAATACTTTATTGCGGAGAACATCCAGTTTCGG AACACAGCACCCCAACCGCCTCCAGGTGCAGTCCTACGGCAAGCTGTGGCTEST: gi|100385872|gb|BY951066.1|BY951066
genomic: CCGTCGGTGTGAATTCTCAATACTTTATTGCGGAGAACATCCAGTTTCGGgtaactacct ... gtgtgtgtagAACACAGCACCCCAACCGCCTCCAGGTGCAGTCCTACGGCAAGCTGTGGCT
EST: CGTCGGTGTGAATTCTNCA-TACTTTATTGCNGAGAACATCCAGTTTCGG GACACAGCACCCCAACCGCCTCCAGGTGCAGTCCTACGGCAAGCTGTGGCTEST: gi|100405967|gb|BY991473.1|BY991473
genomic: CGTCGGTGTGAATTCT-CAATACTTTATTGCGGAGAACATCCAGTTTCGGgtaactacct ... gtgtgtgtagAACACAGCACCCCAACCGCCTCCAGGTGCAGTCCTACGGCAAGCTGTGGCT
EST: CCGTCGGTGTGAATTCTCAATACTTTATTGCGGAGAACATCCAGTTTCGG AACACAGCACCCCAACCGCCTCCAGGTGCAGTCCTACGGCAAGCTGTGGCTEST: gi|208344844|gb|DC912678.1|DC912678
genomic: CCGTCGGTGTGAATTCTCAATACTTTATTGCGGAGAACATCCAGTTTCGGgtaactacct ... gtgtgtgtagAACACAGCACCCCAACCGCCTCCAGGTGCAGTCCTACGGCAAGCTGTGGCT
EST: CCGTCGGTGTGAATTCTCAATACTTTATTGCGGAGAACATCCAGTTTCGG AACACAGCACCCCAACCGCCTCCAGGTGCAGTCCTACGGCANGCTGTGGCTEST: gi|100398019|gb|BY954047.1|BY954047
genomic: CCGTCGGTGTGAATTCTCAATACTTTATTGCGGAGAACATCCAGTTTCGGgtaactacct ... gtgtgtgtagAACACAGCACCCCAACCGCCTCCAGGTGCAGTCCTACGGCAAGCTGTGGCT
EST: CGTCGGTGTGAATTCTCAATACTTTATTGCGGGAGA-CATCCAGTTTCGG AACACAGCACCCCAACCNGC-TCCAGGTGCAGTCCTACGGCAAGCTGTGGCEST: gi|208356793|gb|DC926804.1|DC926804
genomic: CGTCGGTGTGAATTCTCAATACTTTATTGCGG-AGAACATCCAGTTTCGGgtaactacct ... gtgtgtgtagAACACAGCACCCCAACC-GCCTCCAGGTGCAGTCCTACGGCAAGCTGTGGC
EST: CCGTCNGTGTGAATTCTCAATACTTTATTGCGGAGAACATCCAGTTTCGG AACACAGCACCCCAACCGCCTCCAGGTGCAGTCNTACGGCAAGCTGTGGCTEST: gi|208380464|gb|DC914888.1|DC914888
genomic: CCGTCGGTGTGAATTCTCAATACTTTATTGCGGAGAACATCCAGTTTCGGgtaactacct ... gtgtgtgtagAACACAGCACCCCAACCGCCTCCAGGTGCAGTCCTACGGCAAGCTGTGGCT
EST: CCGTCGGTGTGAATTCTCAATACTTTATTGCGGAGAACATCCAGTTTCGG AACACAGCACCCCEST: gi|208392309|gb|DC907856.1|DC907856
genomic: CCGTCGGTGTGAATTCTCAATACTTTATTGCGGAGAACATCCAGTTTCGGgtaactacct ... gtgtgtgtagAACACAGCACCCC
EST: CCGTCGGTGTGAATTCTCAATACTTTATTGCGGAGAACATCCAGTTTCGG AACACAGCACCCCAACCGCCTCCAGGTGCANTCCTACGGCANGCTGTGGCT
genomic: CCGTCGGTGTGAATTCTCAATACTTTATTGCGGAGAACATCCAGTTTCGGgtaactacct ... gtgtgtgtagAACACAGCACCCCAACCGCCTCCAGGTGCAGTCCTACGGCAAGCTGTGGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGTGATTTCGACGACGATGACCAGCTGCTTAAGACCTACAGAAGCGCCACCGTCGGTGTGAATTCTCAATACTTTATTGCGGAGAACATCCAGTTTCGGgtaactaccttgcccttgttccaaaataaccttgtcaatttcctggacgacaagccatcctgtcgaaagaagaagtatgtttgtttgtaaatacttagatcatcatcatcgtgtgtgtag
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