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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTGCTGACTGGGCCAAGGCCAATGGAGCTAAGCAATTCTTGTTCATCAGCAGTGCGGGTATCTATAAGAGCACTTTTGAGCAGCCTCACGTTGAAGGGgtaggtcaattgattttcaccagtcgagcgtaatattgatgcggatccaaatctattccatacggcattctttaatttttggtggagcccctattggtgt...

Basic information

species Physcomitrella patens
transcript PP1S55_140V6.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162175107|gb|FC351981.1|FC351981
EST:     GCAGTGCGGGTATCTATAAGAGCACTTCTGAGCAGCCTCACGTTGAAGGG                         GATGCTGTGAAGGAGGATGCTGGTCACAAGCAAGTAGAGAACTATCTGGCG
genomic: GCAGTGCGGGTATCTATAAGAGCACTTTTGAGCAGCCTCACGTTGAAGGGgtaggtcaat ... cgttcaacagGATGCTGTGAAGGAGGATGCTGGTCACAAGCAAGTAGAGAACTATCTGGCG
EST: gi|162186937|gb|FC362615.1|FC362615
EST:     GCAGTGCGGGTATCTATAAGAGCACTTTTGAGCAGCCTCACGTTGAAGGG                         GATGCTGTGAAGGAGGATGCTGGTCACAAGCAAGTAGAGAACTATCTGGCG
genomic: GCAGTGCGGGTATCTATAAGAGCACTTTTGAGCAGCCTCACGTTGAAGGGgtaggtcaat ... cgttcaacagGATGCTGTGAAGGAGGATGCTGGTCACAAGCAAGTAGAGAACTATCTGGCG
EST: gi|162150552|gb|FC326408.1|FC326408
EST:     GCAGTGCGGGTATCTATAAGAGCACTTTTGAGCAGCCTCACGTTGAAGGG                         GATGCTGTGAAGGAGGATGCTGGTCACAAGCAAGTAGAGAACTATCTGGCG
genomic: GCAGTGCGGGTATCTATAAGAGCACTTTTGAGCAGCCTCACGTTGAAGGGgtaggtcaat ... cgttcaacagGATGCTGTGAAGGAGGATGCTGGTCACAAGCAAGTAGAGAACTATCTGGCG
EST: gi|162247002|gb|FC423944.1|FC423944
EST:     GCAGTGCGGGTATCTATAAGAGCACTTTTGAGCAGCCTCACGTTGAAGGG                         GATGCTGTGAAGGAGGATGCTGGTCACAAGCAAGTAGAGAACTATCTGGCG
genomic: GCAGTGCGGGTATCTATAAGAGCACTTTTGAGCAGCCTCACGTTGAAGGGgtaggtcaat ... cgttcaacagGATGCTGTGAAGGAGGATGCTGGTCACAAGCAAGTAGAGAACTATCTGGCG
EST: gi|162155053|gb|FC330847.1|FC330847
EST:     GCAGTGCGGGTATCTATAAGAGCACTTTTGAGCAGCCTCACGTTGAAGGG                         GATGCTGTGAAGGAGGATGCTGGTCACAAGCAAGTAGAGAACTATCTGGCG
genomic: GCAGTGCGGGTATCTATAAGAGCACTTTTGAGCAGCCTCACGTTGAAGGGgtaggtcaat ... cgttcaacagGATGCTGTGAAGGAGGATGCTGGTCACAAGCAAGTAGAGAACTATCTGGCG
EST: gi|208381343|gb|DC919233.1|DC919233
EST:     GCAGTGCGGGTATCTATAAGAGCACTTTTGAGCAGCCTCACGTTGAAGGG                         GATGCTGTGAAGGAGGATGCTGGTCACAAGCAAGTAGAGAACTATCTGGCG
genomic: GCAGTGCGGGTATCTATAAGAGCACTTTTGAGCAGCCTCACGTTGAAGGGgtaggtcaat ... cgttcaacagGATGCTGTGAAGGAGGATGCTGGTCACAAGCAAGTAGAGAACTATCTGGCG
EST: gi|162164968|gb|FC342159.1|FC342159
EST:     GCAGTGCGGGTATCTATAAGAGCACTTTTGAGCAGCCTCACGTTGAAGGG                         GATGCTGTGAAGGAGGATGCTGGTCACAAGCAAGTAGAGAACTATCTGGCG
genomic: GCAGTGCGGGTATCTATAAGAGCACTTTTGAGCAGCCTCACGTTGAAGGGgtaggtcaat ... cgttcaacagGATGCTGTGAAGGAGGATGCTGGTCACAAGCAAGTAGAGAACTATCTGGCG
EST: gi|162198727|gb|FC374834.1|FC374834
EST:     GCAGTGCGGGTATCTATAAGAGCACTTTTGAGCAGCCTCACGTTGAAGGG                         GATGCTGTGAAGGAGGATGCTGGTCACAAGCAAGTAGAGAACTATCTGGCG
genomic: GCAGTGCGGGTATCTATAAGAGCACTTTTGAGCAGCCTCACGTTGAAGGGgtaggtcaat ... cgttcaacagGATGCTGTGAAGGAGGATGCTGGTCACAAGCAAGTAGAGAACTATCTGGCG
EST: gi|208348027|gb|DC905350.1|DC905350
EST:     NCAGTGCGGGTATCTATAAGANCACTTTTGAGCAGCCTCACGTTGAAGGG                         -ATGCTGTGAANGAGGATGCTGGTCACAA
genomic: GCAGTGCGGGTATCTATAAGAGCACTTTTGAGCAGCCTCACGTTGAAGGGgtaggtcaat ... cgttcaacagGATGCTGTGAAGGAGGATGCTGGTCACAA
EST: gi|162190252|gb|FC366410.1|FC366410
EST:     GCAGTGCGGGTATCTATAAGAGCACTTTNGAGCAGCCTCACGTTGAAGGG                         GATGCTGTGAAGGAGGATGCTGGTCACAAGCAAGTAGAGAACTATCTGGCG
genomic: GCAGTGCGGGTATCTATAAGAGCACTTTTGAGCAGCCTCACGTTGAAGGGgtaggtcaat ... cgttcaacagGATGCTGTGAAGGAGGATGCTGGTCACAAGCAAGTAGAGAACTATCTGGCG
EST: gi|162185076|gb|FC362210.1|FC362210
EST:     GCAGTGCGGGTATCTATAAGAGCACTTTTGAGCAGCCTCACGTTGAAGGG                         GATGCTGTGAAGGAGGATGCTGGTCACAAGCAAGTAGAGAACTATCTGGCG
genomic: GCAGTGCGGGTATCTATAAGAGCACTTTTGAGCAGCCTCACGTTGAAGGGgtaggtcaat ... cgttcaacagGATGCTGTGAAGGAGGATGCTGGTCACAAGCAAGTAGAGAACTATCTGGCG
EST: gi|162279423|gb|FC455539.1|FC455539
EST:     GCAGTGCGGGTATCTATAAGAGCACTTTTGAGCAGCCTCACGTTGAAGGG                         GATGCTGTGAAGGAGGATGCTGGTCACAAGCAAGTAGAGAACTATCTGGCG
genomic: GCAGTGCGGGTATCTATAAGAGCACTTTTGAGCAGCCTCACGTTGAAGGGgtaggtcaat ... cgttcaacagGATGCTGTGAAGGAGGATGCTGGTCACAAGCAAGTAGAGAACTATCTGGCG
EST: gi|208370679|gb|DC948244.1|DC948244
EST:     GCAGTGCGGGTATCTATAAGAGCACTTTTGAGCAGCCTCACGTTGAAGGG                         GATGCTGTGAAGGAGGATGCTGGTCACAAGCAAGTAGAGAACTATCTGGCG
genomic: GCAGTGCGGGTATCTATAAGAGCACTTTTGAGCAGCCTCACGTTGAAGGGgtaggtcaat ... cgttcaacagGATGCTGTGAAGGAGGATGCTGGTCACAAGCAAGTAGAGAACTATCTGGCG
EST: gi|162239677|gb|FC414112.1|FC414112
EST:     AAGAGCACTTTTGAGCAGCCTCACGTTGAAGGG                         GATGCTGTGAAGGAGGATGCTGGTCACAAGCAAGTAGAGAACTATCTGGCG
genomic: AAGAGCACTTTTGAGCAGCCTCACGTTGAAGGGgtaggtcaat ... cgttcaacagGATGCTGTGAAGGAGGATGCTGGTCACAAGCAAGTAGAGAACTATCTGGCG
EST: gi|162184338|gb|FC359721.1|FC359721
EST:     GCAGTGCGGGTATCTATAAGAGCACTTTTGAGCAGCCTCACGTTGAAGGG                         GATGCTGTGAAGGAGGATGCTGGTCACAAGCAAGTAGAGAACTATCTGGCG
genomic: GCAGTGCGGGTATCTATAAGAGCACTTTTGAGCAGCCTCACGTTGAAGGGgtaggtcaat ... cgttcaacagGATGCTGTGAAGGAGGATGCTGGTCACAAGCAAGTAGAGAACTATCTGGCG
EST: gi|162189219|gb|FC366728.1|FC366728
EST:     GCAGTGCGGGTATCTATAAGAGCACTTTTGAGCAGCCTCACGTTGAAGGG                         GATGCTGTGAAGGAGGATGCTGGTCACAAGCAAGTAGAGAACTATCTGGCG
genomic: GCAGTGCGGGTATCTATAAGAGCACTTTTGAGCAGCCTCACGTTGAAGGGgtaggtcaat ... cgttcaacagGATGCTGTGAAGGAGGATGCTGGTCACAAGCAAGTAGAGAACTATCTGGCG
EST: gi|162198728|gb|FC374835.1|FC374835
EST:     GCAGTGCGGGTATCTATAAGAGCACTTTTGAGCAGCCTCACGTTGAAGGG                         GATGCTGTGAAGGAGGATGCTGGTCACAAGCAAGTAGAGAACTATCTGGCG
genomic: GCAGTGCGGGTATCTATAAGAGCACTTTTGAGCAGCCTCACGTTGAAGGGgtaggtcaat ... cgttcaacagGATGCTGTGAAGGAGGATGCTGGTCACAAGCAAGTAGAGAACTATCTGGCG
EST: gi|18333691|gb|BJ165706.1|BJ165706
EST:     GCAGTGCGGGTATCTATAAGAGCACTTTTGAGCAGCCTCACGTTGAAGGG                         GATGCTGTGAAGGAGGATGCTGGTCACAAGCAAGTAGAGAACTATCTGGCG
genomic: GCAGTGCGGGTATCTATAAGAGCACTTTTGAGCAGCCTCACGTTGAAGGGgtaggtcaat ... cgttcaacagGATGCTGTGAAGGAGGATGCTGGTCACAAGCAAGTAGAGAACTATCTGGCG
EST: gi|162246117|gb|FC423579.1|FC423579
EST:     GCAGTGCGGGTATCTATAAGAGCACTTTTGAGCAGCCTCACGTTGAAGGG                         GATGCTGTGAAGGAGGATGCTGGTCACAAAGCA-GTAGAGAACTATCTGGC
genomic: GCAGTGCGGGTATCTATAAGAGCACTTTTGAGCAGCCTCACGTTGAAGGGgtaggtcaat ... cgttcaacagGATGCTGTGAAGGAGGATGCTGGTCACAA-GCAAGTAGAGAACTATCTGGC
EST: gi|162238804|gb|FC415046.1|FC415046
EST:     GCAGTGCGGGTATCTATAAGAGCACTTTTGAGCAGCCTCACGTTGAAGGG                         GATGCTGTGAAGGAGGATGCTGGTCACAAGCAAGTAGAGAACTATCTGGCG
genomic: GCAGTGCGGGTATCTATAAGAGCACTTTTGAGCAGCCTCACGTTGAAGGGgtaggtcaat ... cgttcaacagGATGCTGTGAAGGAGGATGCTGGTCACAAGCAAGTAGAGAACTATCTGGCG
EST: gi|162150551|gb|FC326407.1|FC326407
EST:     GCAGTGCGGGTATCTATAAGAGCACTTTTGAGCAGCCTCACGTTGAAGGG                         GATGCTGTGAAGGAGGATGCTGGTCACAAGCAAGTAGAGAACTATCTGGCG
genomic: GCAGTGCGGGTATCTATAAGAGCACTTTTGAGCAGCCTCACGTTGAAGGGgtaggtcaat ... cgttcaacagGATGCTGTGAAGGAGGATGCTGGTCACAAGCAAGTAGAGAACTATCTGGCG
EST: gi|162279422|gb|FC455538.1|FC455538
EST:     GCAGTGCGGGTATCTATAAGAGCACTTTTGAGCAGCCTCACGTTGAAGGG                         GATGCTGTGAAGGAGGATGCTGGTCACAAGCAAGTAGAGAACTATCTGGCG
genomic: GCAGTGCGGGTATCTATAAGAGCACTTTTGAGCAGCCTCACGTTGAAGGGgtaggtcaat ... cgttcaacagGATGCTGTGAAGGAGGATGCTGGTCACAAGCAAGTAGAGAACTATCTGGCG
EST: gi|162183536|gb|FC359010.1|FC359010
EST:     GCAGTGCGGGTATCTATAAGAGCACTTTTGAGCAGCCTCACGTTGAAGGG                         GATGCTGTGAAGGAGGATGCTGGTCACAAGCAAGTAGAGAACTATCTGGCG
genomic: GCAGTGCGGGTATCTATAAGAGCACTTTTGAGCAGCCTCACGTTGAAGGGgtaggtcaat ... cgttcaacagGATGCTGTGAAGGAGGATGCTGGTCACAAGCAAGTAGAGAACTATCTGGCG
EST: gi|162225653|gb|FC401795.1|FC401795
EST:     GCAGTGCGGGTATCTATAAGAGCACTTTTGAGCAGCCTCACGTTGAAGGG                         GATGCTGTGAAGGAGGATGCTGGTCACAAGCAAGTAGAGAACTATCTGGCG
genomic: GCAGTGCGGGTATCTATAAGAGCACTTTTGAGCAGCCTCACGTTGAAGGGgtaggtcaat ... cgttcaacagGATGCTGTGAAGGAGGATGCTGGTCACAAGCAAGTAGAGAACTATCTGGCG
EST: gi|162246116|gb|FC423578.1|FC423578
EST:     GCAGTGCGGGTATCTATAAGAGCACTTTTGAGCAGCCTCACGTTGAAGGG                         GATGCTGTGAAGGAGGATGCTGGTCACAAGCAAGTAGAGAACTATCTGGCG
genomic: GCAGTGCGGGTATCTATAAGAGCACTTTTGAGCAGCCTCACGTTGAAGGGgtaggtcaat ... cgttcaacagGATGCTGTGAAGGAGGATGCTGGTCACAAGCAAGTAGAGAACTATCTGGCG
EST: gi|162155054|gb|FC330848.1|FC330848
EST:     GCAGTGCGGGTATCTATAAGAGCACTTTTGAGCAGCCTCACGTTGAAGGG                         GATGCTGTGAAGGAGGATGCTGGTCANCA-GCAAGTAGAGAACTATCTGGC
genomic: GCAGTGCGGGTATCTATAAGAGCACTTTTGAGCAGCCTCACGTTGAAGGGgtaggtcaat ... cgttcaacagGATGCTGTGAAGGAGGATGCTGGTCA-CAAGCAAGTAGAGAACTATCTGGC
EST: gi|100447062|gb|CJ971361.1|CJ971361
EST:     GCAGTGCGGGTATCTATAAGANCACTTTTGAGCAGCCTCACGTTGAAGGG                         -ATGCTGTGAAGGAAGATGCTGGTCACAAGCAAGTANAGAN-TATCTGGCG
genomic: GCAGTGCGGGTATCTATAAGAGCACTTTTGAGCAGCCTCACGTTGAAGGGgtaggtcaat ... cgttcaacagGATGCTGTGAAGGAGGATGCTGGTCACAAGCAAGTAGAGAACTATCTGGCG
EST: gi|208363799|gb|DC943256.1|DC943256
EST:     GCAGTGCGGGTATCTATAAGAGCACTTTTGAGCAGCCTCACGTTGAANGG                         GATGCTGTGAAAGAAGGATGCTGGGTCACAAGCAAGTAGAAAACTATCTGG
genomic: GCAGTGCGGGTATCTATAAGAGCACTTTTGAGCAGCCTCACGTTGAAGGGgtaggtcaat ... cgttcaacagGATGCTGTGAAGGA-GGATGCTGG-TCACAAGCAAGTAGAGAACTATCTGG
EST: gi|208360573|gb|DC950091.1|DC950091
EST:     GCAGTGCGGGTATCTATAAGAGCACTTTTGAGCAGCCTCACGTTGAAGGG                         GATGCTGTGAAGGAGGATGCTGGTCACAAGCAAGTAGAGAACTATCTGGCG
genomic: GCAGTGCGGGTATCTATAAGAGCACTTTTGAGCAGCCTCACGTTGAAGGGgtaggtcaat ... cgttcaacagGATGCTGTGAAGGAGGATGCTGGTCACAAGCAAGTAGAGAACTATCTGGCG
EST: gi|162190931|gb|FC368129.1|FC368129
EST:     GCAGTGCGGGTATCTATAAGAGCACTTTTGAGCAGCCTCACGTTGAAGGG                         GATGCTGTGAAGGGAG-ATGCTGGTCACAAGCAAGTAGAGAACTATCTGGC
genomic: GCAGTGCGGGTATCTATAAGAGCACTTTTGAGCAGCCTCACGTTGAAGGGgtaggtcaat ... cgttcaacagGATGCTGTGAAGG-AGGATGCTGGTCACAAGCAAGTAGAGAACTATCTGGC
EST: gi|162183537|gb|FC359011.1|FC359011
EST:     GCAGTGCGGGTATCTATAAGAGCACTTTTGAGCAGCCTCACGTTGAAGGG                         GATGCTGTGAAGGAGGATGCTGGTCACAAGCAAGTAGAGAACTATCTGGCG
genomic: GCAGTGCGGGTATCTATAAGAGCACTTTTGAGCAGCCTCACGTTGAAGGGgtaggtcaat ... cgttcaacagGATGCTGTGAAGGAGGATGCTGGTCACAAGCAAGTAGAGAACTATCTGGCG
EST: gi|162168974|gb|FC345656.1|FC345656
EST:     GCAGTGCGGGTATCTATAAGAGCACTTTTGAGCAGCCTCACGTTGAAGGG                         GATGCTGTGAAGGANGATGCTGGTCACAAGCAAGTAGAGAACTATCTGGCG
genomic: GCAGTGCGGGTATCTATAAGAGCACTTTTGAGCAGCCTCACGTTGAAGGGgtaggtcaat ... cgttcaacagGATGCTGTGAAGGAGGATGCTGGTCACAAGCAAGTAGAGAACTATCTGGCG
EST: gi|162180784|gb|FC358285.1|FC358285
EST:     GCAGTGCGGGTATCTATAAGAGCACTTTTGAGCAGCCTCACGTTGAAGGG                         GATGCTGTGAAGGAGGATGCTGGTCACAAGCAAGTAGAGAACTATCTGGCG
genomic: GCAGTGCGGGTATCTATAAGAGCACTTTTGAGCAGCCTCACGTTGAAGGGgtaggtcaat ... cgttcaacagGATGCTGTGAAGGAGGATGCTGGTCACAAGCAAGTAGAGAACTATCTGGCG
EST: gi|162251375|gb|FC427991.1|FC427991
EST:     GCAGTGCGGGTATCTATAAGAGCACTTTTGAGCAGCCTCACGTTGAAGGG                         GATGCTGTGAAGGAGGATGCTGGTCACAAGCAAGTAGAGAACTATCTGGC
genomic: GCAGTGCGGGTATCTATAAGAGCACTTTTGAGCAGCCTCACGTTGAAGGGgtaggtcaat ... cgttcaacagGATGCTGTGAAGGAGGATGCTGGTCACAAGCAAGTAGAGAACTATCTGGC
EST: gi|162168973|gb|FC345655.1|FC345655
EST:     GCAGTGCGGGTATCTATAAGAGCACTTTTGAGCAGCCTCACGTTGAAGGG                         GATGCTGTGAAGGAGGATGCTGGTCACAAGCAAGTAGAGAACTATCTGGCG
genomic: GCAGTGCGGGTATCTATAAGAGCACTTTTGAGCAGCCTCACGTTGAAGGGgtaggtcaat ... cgttcaacagGATGCTGTGAAGGAGGATGCTGGTCACAAGCAAGTAGAGAACTATCTGGCG
EST: gi|162250823|gb|FC426867.1|FC426867
EST:     ATAAGAGCACTTTGGAGCAGCCTCACGTTGAAGGG                         GATGCTGTGAAGGAGGATGCTGGTCACAAGCAAGTAGAGAACTATCTGGCG
genomic: ATAAGAGCACTTTTGAGCAGCCTCACGTTGAAGGGgtaggtcaat ... cgttcaacagGATGCTGTGAAGGAGGATGCTGGTCACAAGCAAGTAGAGAACTATCTGGCG
EST: gi|162151427|gb|FC326932.1|FC326932
EST:     GCAGTGCGGGTATCTATAAGAGCACTTTTGAGCAGCCTCACGTTGAAGGG                         GATGCTGTGAAGGAGGATGCTGGTCACAAGCAAGTAGAGAACTATCTGGCG
genomic: GCAGTGCGGGTATCTATAAGAGCACTTTTGAGCAGCCTCACGTTGAAGGGgtaggtcaat ... cgttcaacagGATGCTGTGAAGGAGGATGCTGGTCACAAGCAAGTAGAGAACTATCTGGCG
EST: gi|162267916|gb|FC444517.1|FC444517
EST:     GCAGTGCGGGTATCTATAAGAGCACTTTTGAGCAGCCTCACGTTGAAGGG                         GATGCTGTGAAGGAGGATGCTGGTCACAAGCAAGTAGAGAACTATCTGGCG
genomic: GCAGTGCGGGTATCTATAAGAGCACTTTTGAGCAGCCTCACGTTGAAGGGgtaggtcaat ... cgttcaacagGATGCTGTGAAGGAGGATGCTGGTCACAAGCAAGTAGAGAACTATCTGGCG
EST: gi|208386256|gb|DC952969.1|DC952969
EST:     GCAGTGCGGGTATCTATAAGAGCACTTTTGAGCAGCCTCACGTTGAAGGG                         GATGCTGTGAAGGAGGATGCTGGTCACAAGCAAGTAGAGAACTATCTGGCG
genomic: GCAGTGCGGGTATCTATAAGAGCACTTTTGAGCAGCCTCACGTTGAAGGGgtaggtcaat ... cgttcaacagGATGCTGTGAAGGAGGATGCTGGTCACAAGCAAGTAGAGAACTATCTGGCG
EST: gi|162179836|gb|FC355907.1|FC355907
EST:     GCAGTGCGGGTATCTATAAGAGCACTTTTGAGCAGCCTCACGTTGAAGGG                         GATGCTGTGAAGGAGGATGCTGGTCACAAGCAAGTAGAGAACTATCTGGCG
genomic: GCAGTGCGGGTATCTATAAGAGCACTTTTGAGCAGCCTCACGTTGAAGGGgtaggtcaat ... cgttcaacagGATGCTGTGAAGGAGGATGCTGGTCACAAGCAAGTAGAGAACTATCTGGCG
EST: gi|162240364|gb|FC419102.1|FC419102
EST:     GCAGTGCGGGTATCTATAAGAGCACTTTTGAGCAGCCTCACGTTGAAGGG                         GATGCTGTGAAGGAGGATGCTGGTCACAAGCAAGTAGAGAACTATCTGGCG
genomic: GCAGTGCGGGTATCTATAAGAGCACTTTTGAGCAGCCTCACGTTGAAGGGgtaggtcaat ... cgttcaacagGATGCTGTGAAGGAGGATGCTGGTCACAAGCAAGTAGAGAACTATCTGGCG
EST: gi|162173366|gb|FC349537.1|FC349537
EST:     GCAGTGCGGGTATCTATAAGAGCACTTTTGAGCAGCCTCACGTTGAAGGG                         GATGCTGTGAAGGAGGATGCTGGTCACAAGCAAGTAGAGAACTATCTGGCG
genomic: GCAGTGCGGGTATCTATAAGAGCACTTTTGAGCAGCCTCACGTTGAAGGGgtaggtcaat ... cgttcaacagGATGCTGTGAAGGAGGATGCTGGTCACAAGCAAGTAGAGAACTATCTGGCG
EST: gi|162184339|gb|FC359722.1|FC359722
EST:     GCAGTGCGGGTATCTATAAGAGCACTTTTGAGCAGCCTCACGTTGAAGGG                         GATGCTGTGAAGGAGGATGCTGGTCACAAGCAAGTAGAGAACTATCTGGCG
genomic: GCAGTGCGGGTATCTATAAGAGCACTTTTGAGCAGCCTCACGTTGAAGGGgtaggtcaat ... cgttcaacagGATGCTGTGAAGGAGGATGCTGGTCACAAGCAAGTAGAGAACTATCTGGCG
EST: gi|162164542|gb|FC341837.1|FC341837
EST:     GCAGTGCGGGTATCTATAAGAGCACTTTTGAGCAGCCTCACGTTGAAGGG                         GATGCTGTGAAGGAGGATGCTGGTCACAAGCAAGTAGAGAACTATCTGGCG
genomic: GCAGTGCGGGTATCTATAAGAGCACTTTTGAGCAGCCTCACGTTGAAGGGgtaggtcaat ... cgttcaacagGATGCTGTGAAGGAGGATGCTGGTCACAAGCAAGTAGAGAACTATCTGGCG
EST: gi|162181815|gb|FC357414.1|FC357414
EST:     GCAGTGCGGGTATCTATAAGAGCACTTTTGAGCAGCCTCACGTTGAAGGG                         GATGCTGTGAAGGAGGATGCTGGTCACAAGCAAGTAGAGAACTATCTGGCG
genomic: GCAGTGCGGGTATCTATAAGAGCACTTTTGAGCAGCCTCACGTTGAAGGGgtaggtcaat ... cgttcaacagGATGCTGTGAAGGAGGATGCTGGTCACAAGCAAGTAGAGAACTATCTGGCG
EST: gi|162240363|gb|FC419101.1|FC419101
EST:     GCAGTGCGGGTATCTATAAGAGCACTTTTGAGCAGCCTCACGTTGAAGGG                         GATGCTGTGAAGGAGGATGCTGGTCACAAGCAAGTAGAGAACTATCTGGCG
genomic: GCAGTGCGGGTATCTATAAGAGCACTTTTGAGCAGCCTCACGTTGAAGGGgtaggtcaat ... cgttcaacagGATGCTGTGAAGGAGGATGCTGGTCACAAGCAAGTAGAGAACTATCTGGCG
EST: gi|162218664|gb|FC394630.1|FC394630
EST:     GCAGTGCGGGTATCTATAAGAGCACTTTTGAGCAGCCTCACGTTGAAGGG                         GATGCTGTGAAGGAGGATGCTGGTCACAAGCAAGTAGAGAACTATCTGGCG
genomic: GCAGTGCGGGTATCTATAAGAGCACTTTTGAGCAGCCTCACGTTGAAGGGgtaggtcaat ... cgttcaacagGATGCTGTGAAGGAGGATGCTGGTCACAAGCAAGTAGAGAACTATCTGGCG
EST: gi|162157207|gb|FC332841.1|FC332841
EST:     GCAGTGCGGGTATCTATAAGAGCACTTTTGAGCAGCCTCACGTTGAAGGG                         GATGCTGTGAAGGAGGATGCTGGTCACAAGCAAGTAGAGAACTATCTGGCG
genomic: GCAGTGCGGGTATCTATAAGAGCACTTTTGAGCAGCCTCACGTTGAAGGGgtaggtcaat ... cgttcaacagGATGCTGTGAAGGAGGATGCTGGTCACAAGCAAGTAGAGAACTATCTGGCG
EST: gi|208359702|gb|DC946592.1|DC946592
EST:     GCAGTGCGGGTATCTATAAGAGCACTTTTGAGCAGCCTCACGTTGAAGGG                         GATGCTGTGAAGGAGGATGCTGGTCACAAGCAAGTAGAGAACTATCTGGCG
genomic: GCAGTGCGGGTATCTATAAGAGCACTTTTGAGCAGCCTCACGTTGAAGGGgtaggtcaat ... cgttcaacagGATGCTGTGAAGGAGGATGCTGGTCACAAGCAAGTAGAGAACTATCTGGCG
EST: gi|162189205|gb|FC366727.1|FC366727
EST:     GCAGTGCGGGTATCTATAAGAGCACTTTTGAGCAGCCTCACGTTGAAGGG                         GATGCTGTGAAGGAGGATGCTGGTCACAAGCAAGTAGAGAACTATCTGGCG
genomic: GCAGTGCGGGTATCTATAAGAGCACTTTTGAGCAGCCTCACGTTGAAGGGgtaggtcaat ... cgttcaacagGATGCTGTGAAGGAGGATGCTGGTCACAAGCAAGTAGAGAACTATCTGGCG
EST: gi|162238803|gb|FC415045.1|FC415045
EST:     ATAAGAGCACTTTTGAGCAGCCTCACGTTGAAGGG                         GATGCTGTGAAGGAGGATGCTGGTCACAAGCAAGTAGAGAACTATCTGGCG
genomic: ATAAGAGCACTTTTGAGCAGCCTCACGTTGAAGGGgtaggtcaat ... cgttcaacagGATGCTGTGAAGGAGGATGCTGGTCACAAGCAAGTAGAGAACTATCTGGCG
EST: gi|162164111|gb|FC340387.1|FC340387
EST:     GCAGTGCGGGTATCTATAAGAGCACTTTTGAGCAGCCTCACGTTGAAGGG                         GATGCTGTGAAGGAGGATGCTGGTCACAAGCAAGTAGAGAACTATCTGGCG
genomic: GCAGTGCGGGTATCTATAAGAGCACTTTTGAGCAGCCTCACGTTGAAGGGgtaggtcaat ... cgttcaacagGATGCTGTGAAGGAGGATGCTGGTCACAAGCAAGTAGAGAACTATCTGGCG
EST: gi|18339624|gb|BJ171651.1|BJ171651
EST:     GCAGTGCGGGTATCTATAAGAGCACTTTTGAGCAGCCTCACGTTGAAGGG                         GATGCTGTGAAGGAGGATGCTGGTCACAAGCAAGTAGAGAACTATCTGGCG
genomic: GCAGTGCGGGTATCTATAAGAGCACTTTTGAGCAGCCTCACGTTGAAGGGgtaggtcaat ... cgttcaacagGATGCTGTGAAGGAGGATGCTGGTCACAAGCAAGTAGAGAACTATCTGGCG
EST: gi|162161912|gb|FC338495.1|FC338495
EST:     AAGAGCACTTTTGAGCAGCCTCACGTTGAAGGG                         GATGCTGTGAAGGAGGATGCTGGTCACAAGCAAGTAGAGAACTATCTGGCG
genomic: AAGAGCACTTTTGAGCAGCCTCACGTTGAAGGGgtaggtcaat ... cgttcaacagGATGCTGTGAAGGAGGATGCTGGTCACAAGCAAGTAGAGAACTATCTGGCG
EST: gi|162164112|gb|FC340388.1|FC340388
EST:     GCAGTGCGGGTATCTATAAGAGCACTTTTGAGCAGCCTCACGTTGAAGGG                         GATGCTGTGAAGGAGGATGCTGGTCACAAGCAAGTAGAGAACTATCTGGCG
genomic: GCAGTGCGGGTATCTATAAGAGCACTTTTGAGCAGCCTCACGTTGAAGGGgtaggtcaat ... cgttcaacagGATGCTGTGAAGGAGGATGCTGGTCACAAGCAAGTAGAGAACTATCTGGCG
EST: gi|162241056|gb|FC414113.1|FC414113
EST:     GCAGTGCGGGTATCTATAAGAGCACTTTTGAGCAGCCTCACGTTGAAGGG                         GATGCTGTGAAGGAGGATGCTGGTCAC
genomic: GCAGTGCGGGTATCTATAAGAGCACTTTTGAGCAGCCTCACGTTGAAGGGgtaggtcaat ... cgttcaacagGATGCTGTGAAGGAGGATGCTGGTCAC
EST: gi|162157206|gb|FC332840.1|FC332840
EST:     GAGCACTTTTGAGCAGCCTCACGTTGAAGGG                         GATGCTGTGAAGGAGGATGCTGGTCACAAGCAAGTAGAGAACTATCTGGCG
genomic: GAGCACTTTTGAGCAGCCTCACGTTGAAGGGgtaggtcaat ... cgttcaacagGATGCTGTGAAGGAGGATGCTGGTCACAAGCAAGTAGAGAACTATCTGGCG
EST: gi|162155303|gb|FC331227.1|FC331227
EST:     GCAGTGCGGGTATCTATAAGAGCACTTTTGAGCAGCCTCACGTTGAAGGG                         GATGCTGTGAAGGAGGATGCTGGTCACAAGCAAGTAGAGAACTATCTGGCG
genomic: GCAGTGCGGGTATCTATAAGAGCACTTTTGAGCAGCCTCACGTTGAAGGGgtaggtcaat ... cgttcaacagGATGCTGTGAAGGAGGATGCTGGTCACAAGCAAGTAGAGAACTATCTGGCG
EST: gi|208396211|gb|DC924005.1|DC924005
EST:     GCAGTGCGGGTATCTATAAGAGCACTTTTGAGCAGCCTCACGTTGAAGGG                         GATGCTGTGAAGGAGAATGCTGGTCACAAGCAAGTAGAGAACTATCTGGCG
genomic: GCAGTGCGGGTATCTATAAGAGCACTTTTGAGCAGCCTCACGTTGAAGGGgtaggtcaat ... cgttcaacagGATGCTGTGAAGGAGGATGCTGGTCACAAGCAAGTAGAGAACTATCTGGCG
EST: gi|162218665|gb|FC394631.1|FC394631
EST:     GCAGTGCGGGTATCTATAAGAGCACTTTTGAGCAGCCTCACGTTGAAGGG                         GATGCTGTGAAGGAGGATGCTGGTCACAAGCAAGTAGAGAACTATCTGGCG
genomic: GCAGTGCGGGTATCTATAAGAGCACTTTTGAGCAGCCTCACGTTGAAGGGgtaggtcaat ... cgttcaacagGATGCTGTGAAGGAGGATGCTGGTCACAAGCAAGTAGAGAACTATCTGGCG
EST: gi|162196302|gb|FC373019.1|FC373019
EST:     GCAGTGCGGGTATCTATAAGAGCACTTTTGAGCAGCCTCACGTTGAAGGG                         GATGCTGTGAAGGAGGATGCTGGTCACAAGCAAGTAGAGAACTATCTGGCG
genomic: GCAGTGCGGGTATCTATAAGAGCACTTTTGAGCAGCCTCACGTTGAAGGGgtaggtcaat ... cgttcaacagGATGCTGTGAAGGAGGATGCTGGTCACAAGCAAGTAGAGAACTATCTGGCG
EST: gi|6167062|gb|AW145381.1|AW145381
EST:     GCAGTGCGGGTATCTATAAGAGCACTTTTGAGCAGCCTCACGTTGAATGT                         GATGCTGTGAAGGATGATGCTGGTCACAAGCAAGTAGAGAACTATCTGGCG
genomic: GCAGTGCGGGTATCTATAAGAGCACTTTTGAGCAGCCTCACGTTGAAGGGgtaggtcaat ... cgttcaacagGATGCTGTGAAGGAGGATGCTGGTCACAAGCAAGTAGAGAACTATCTGGCG
EST: gi|162190253|gb|FC366411.1|FC366411
EST:     GCAGTGCGGGTATCTATAAGAGCACTTTTGAGCAGCCTCACGTTGAAGGG                         GATGCTGTGAAGGAGGATGCTGGTCACAAGCAAGTAGAGAACTATCTGGCG
genomic: GCAGTGCGGGTATCTATAAGAGCACTTTTGAGCAGCCTCACGTTGAAGGGgtaggtcaat ... cgttcaacagGATGCTGTGAAGGAGGATGCTGGTCACAAGCAAGTAGAGAACTATCTGGCG
EST: gi|162206313|gb|FC382591.1|FC382591
EST:     GCAGTGCGGGTATCTATAAGAGCACTTTTGAGCAGCCTCACGTTGAAGGG                         GATGCTGTGAAGGAGGATGCTGGTCACAAGCAAGTAGAGAACTATCTGGCG
genomic: GCAGTGCGGGTATCTATAAGAGCACTTTTGAGCAGCCTCACGTTGAAGGGgtaggtcaat ... cgttcaacagGATGCTGTGAAGGAGGATGCTGGTCACAAGCAAGTAGAGAACTATCTGGCG
EST: gi|162250824|gb|FC426868.1|FC426868
EST:     GCAGTGCGGGTATCTATAAGAGCACTTTTGAGCAGCCTCACGTTGAAGGG                         GATGCTGTGAAAGGAG-ATGCTGGTCACAAGCAAGT
genomic: GCAGTGCGGGTATCTATAAGAGCACTTTTGAGCAGCCTCACGTTGAAGGGgtaggtcaat ... cgttcaacagGATGCTGTGAA-GGAGGATGCTGGTCACAAGCAAGT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 34 (downstream exon)
Score: 61

TGTTGCTGACTGGGCCAAGGCCAATGGAGCTAAGCAATTCTTGTTCATCAGCAGTGCGGGTATCTATAAGAGCACTTTTGAGCAGCCTCACGTTGAAGGGgtaggtcaat ... cgttcaacagGATGCTGTGAAGGAGGATGCTGGTCACAAGCAAGTAGAGAACTATCTGGCGGAATTGGGCTTAGAGTCCTGGGCCTCATTCCGACCTCAGTACATGACCG




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGTTGCTGACTGGGCCAAGGCCAATGGAGCTAAGCAATTCTTGTTCATCAGCAGTGCGGGTATCTATAAGAGCACTTTTGAGCAGCCTCACGTTGAAGGGgtaggtcaattgattttcaccagtcgagcgtaatattgatgcggatccaaatctattccatacggcattctttaatttttggtggagcccctattggtgt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG