1 5' 3' | 2 5' 3' | 3 5' 3' |
CCTGCTGGATGACTGTGCGATGAAAGAAGCGCTCATCAATGGCACTATTGCTGGCTGTGCCCTGGACGGTATCGAAGGCCCCCAGTGGCTAGAAGCTTGGgtacagcgctatcttcatgtctgctaacagcttcaccatttctactgcatgatgtttaattacaaatagaatggattcttcattaattatttgttcgacttctttgtcttgaacag
species | Physcomitrella patens |
transcript | PP1S55_132V6.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CTGGCTGTGCCCTGGACGGTATCGAAGGCCCCCAGTGGCTAGAAGCTTGG GTGAGGGAAATGCCCAACGTGTTGATTCTTCCTCGCAGTGCCGATTACAGTEST: gi|67508082|gb|BJ940953.1|BJ940953
genomic: CTGGCTGTGCCCTGGACGGTATCGAAGGCCCCCAGTGGCTAGAAGCTTGGgtacagcgct ... tcttgaacagGTGAGGGAAATGCCCAACGTGTTGATTCTTCCTCGCAGTGCCGATTACAGT
EST: CTGGCTGTGCCCTGGACGGTATCGAAGGCCCCCAGTGGCTAGAAGCTTGG GTGAGGGAAATGCCCAACGTGTTGATTCTTCCTCGCAGTGCCGATTACAGTEST: gi|67579412|gb|BJ951533.1|BJ951533
genomic: CTGGCTGTGCCCTGGACGGTATCGAAGGCCCCCAGTGGCTAGAAGCTTGGgtacagcgct ... tcttgaacagGTGAGGGAAATGCCCAACGTGTTGATTCTTCCTCGCAGTGCCGATTACAGT
EST: CTAGAAGCTTGG GTGAGGGAAATGCCCAACGTGTTGATTCTTCCTCGCAGTGCCGATTACAGT
genomic: CTAGAAGCTTGGgtacagcgct ... tcttgaacagGTGAGGGAAATGCCCAACGTGTTGATTCTTCCTCGCAGTGCCGATTACAGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCTGCTGGATGACTGTGCGATGAAAGAAGCGCTCATCAATGGCACTATTGCTGGCTGTGCCCTGGACGGTATCGAAGGCCCCCAGTGGCTAGAAGCTTGGgtacagcgctatcttcatgtctgctaacagcttcaccatttctactgcatgatgtttaattacaaatagaatggattcttcattaattatttgttcgacttctttgtcttgaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC