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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTGCCCTTCAGAGATTTGTTTCTATTCTCCCTAGTGTCAAATACCTCGATTGTTTCCATGAACTTGAGTCTCATGCTCAATTCAGTGGGTTTCTACCAGgtaggtgtatgatcctgaatagctgtgtgcgataacgaaggttcctaatactatagagggagttgcaggatgatctaggcgaaccagtgtgtgtgtatat...

Basic information

species Physcomitrella patens
transcript PP1S54_317V6.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S54_317V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: AT5G42420.2 (Arabidopsis thaliana), 5'ss of exon 2
TTTGCCCTTCAGAGATTTGTTTCTATTCTCCCTAGTGTCAAATACCTCGATTGTTTCCATGAACTTGAGTCTCATGCTCAATTCAGTGGGTTTCTACCAGgtaggtg--tatgatcctgaatagctgtgtgcgataacgaaggttcctaat---actatagagggagttgcaggatgatctaggcgaaccagtgtgtgtgtatat
| | ||  |  | ||  |  ||   |||||| | ||  | |||  ||| |||| | | |||||||| ||||||||||||||||| || || |||||||| |||  |      ||||  ||      |  |     | | ||      | ||   |  ||| |  || ||  |   || | |||  ||  ||   | | | |    
TGTACCTATGTGGGAGCTTATTTGGTTCTCCATTGTCGCTAATGTCTCTATTGCTGCTATGAACTTCAGTCTCATGCTCAATTCCGTTGGCTTCTACCAAgtaattcatctcgatctcgatcttgagcatatagaatcaaattgctttgatttgagcatatatagactttgattttggtttagtggattca-cattttttt----

upper sequence: PP1S54_317V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: AT5G42420.1 (Arabidopsis thaliana), 5'ss of exon 2
TTTGCCCTTCAGAGATTTGTTTCTATTCTCCCTAGTGTCAAATACCTCGATTGTTTCCATGAACTTGAGTCTCATGCTCAATTCAGTGGGTTTCTACCAGgtaggt--gtatgatcctgaatagctgtgtgcgataacgaaggttcctaat---actatagagggagttgcaggatgatctaggcgaaccag---tgtgtgtgtatat---
| | ||  |  | ||  |  ||   |||||| | ||  | |||  ||| |||| | | |||||||| ||||||||||||||||| || || |||||||| |||  |      ||||  ||      |  |     | | ||      | ||   |  ||| |  || ||  |   || | |||  ||  ||    | | |||||  ||   
TGTACCTATGTGGGAGCTTATTTGGTTCTCCATTGTCGCTAATGTCTCTATTGCTGCTATGAACTTCAGTCTCATGCTCAATTCCGTTGGCTTCTACCAAgtaattcatctcgatctcgatcttgagcatatagaatcaaattgctttgatttgagcatatatagactttgattttggtttagtggattcacatttttttgtgttgattag