1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GTTGTATGGGTTTGCCTCCGGGGACCCTTTGAGGTTCCGTAGAGCCCTCGGCCATTCTGATTTGTTTTATGTCGAAGATCGGGATCTCGAATTTAAAGAGgtaaattagtgattgtatgccattgatgtttgtagtctacttctatgcggtttcctgagtcagagcgagatatcgaggataattggtcatcctcattatt...
species | Physcomitrella patens |
transcript | PP1S54_134V6.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GCCATTCTGATTTGTTTTATGTCGAAGATCGGGATCTCGAATTTAAAGAG GTTGTCGAAGCTCCCTTGCCCAAAGCTCCGTTAGATGCCTCTGTTGTTGCTEST: gi|100367363|gb|BY966945.1|BY966945
genomic: GCCATTCTGATTTGTTTTATGTCGAAGATCGGGATCTCGAATTTAAAGAGgtaaattagt ... tgttatacagGTTGTCGAAGCTCCCTTGCCCAAAGCTCCGTTAGATGCCTCTGTTGTTGCT
EST: GCCATTCTGATTTGTTTTATGTCGAAGATCGGGATCTCGAATTTAAAGAG GTTGTCGAAGCTCCCTTTGCC-AAANNGCTC-GT-AGATGCCTCTGTTGTTEST: gi|67508060|gb|BJ940932.1|BJ940932
genomic: GCCATTCTGATTTGTTTTATGTCGAAGATCGGGATCTCGAATTTAAAGAGgtaaattagt ... tgttatacagGTTGTCGAAGCTCCCTT-GCCCAAA--GCTCCGTTAGATGCCTCTGTTGTT
EST: GCCATTCTGATTTGTTTTATGTCGAAGATCGGGATCTCGAATTTAAAGAG GTTGTCGAAGCTCCCTTGCCCAAAGCTCCGTTAGATGCCTCTGTTGTTGCT
genomic: GCCATTCTGATTTGTTTTATGTCGAAGATCGGGATCTCGAATTTAAAGAGgtaaattagt ... tgttatacagGTTGTCGAAGCTCCCTTGCCCAAAGCTCCGTTAGATGCCTCTGTTGTTGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTGTATGGGTTTGCCTCCGGGGACCCTTTGAGGTTCCGTAGAGCCCTCGGCCATTCTGATTTGTTTTATGTCGAAGATCGGGATCTCGAATTTAAAGAGgtaaattagtgattgtatgccattgatgtttgtagtctacttctatgcggtttcctgagtcagagcgagatatcgaggataattggtcatcctcattatt
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