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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATTGCGGCAATTAAAGCATGAGAATATCATTGAAATGCTTGATGCCTTTGAAAGCCCCCAGGAGTTCTGTGTTGTGACTGAGTTTGCTCAGgtatgtccttctgcaagtgcatctcattgcatctcttcatcggagtgcaatttatttacaaaagtcttacaattcattgcggaaggaaggccttcctagt...

Basic information

species Physcomitrella patens
transcript PP1S53_93V6.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S53_93V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: LOC_Os12g24550.1 (Oryza sativa), 5'ss of exon 4
ATATTGCGGCAATTAAAGCATGAGAATATCATTGAAATGCTTGATGCCTTTGAAAGCCCCCAGGAGTTCTGTGTTGTGACTGAGTTTGCTCAGgtat--gtccttctgcaagtgca--tctcattgcatctcttcatcggagtgcaatttatttacaaaagtcttacaattcattgcggaaggaaggccttcctagt
||  || || || | || ||||||||||| || |||||| | ||| | ||||||| ||| ||||| || ||||| || || |||||||||||||||   ||   | |   |||| |  | |||       |     | | |||| |||||| ||    ||   | | |  | || |  |    |             
ATTCTGAGGAAACTCAAACATGAGAATATAATCGAAATGATCGATTCATTTGAAACCCCTCAGGAATTTTGTGTGGTAACAGAGTTTGCTCAGgtacaggttgatttttcagtgtagttttcaccaacaattggttttgcagtggaatttagttggttaaacttcatatataatggttgtctcag------------

upper sequence: PP1S53_93V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GRMZM2G062524_T02 (Zea mays), 5'ss of exon 3
ATATTGCGGCAATTAAAGCATGAGAATATCATTGAAATGCTTGATGCCTTTGAAAGCCCCCAGGAGTTCTGTGTTGTGACTGAGTTTGCTCAGgtatgtccttctgcaagtgcatctcattgcatctcttcatcggagtgcaattt-atttacaaaagtcttacaattcattgcggaaggaaggccttcctagt
||  |  || || | || |||||||| || ||||||||| | ||||||||||||| ||| |||||||| |||||||| || |||||||||||||||          ||  |  ||  | |||    |  |||||   |     ||| | ||        ||  | |    |   | ||  | |    ||  || 
ATCCTAAGGAAACTCAAACATGAGAACATAATTGAAATGATCGATGCCTTTGAAACCCCTCAGGAGTTTTGTGTTGTCACAGAGTTTGCTCAGgtacacaagaactcagtttgattaccttgtcctttctcatctttgactggtttcaattgtttgcagctggctaactctaatgaaa--atgcttgtctcag-

upper sequence: PP1S53_93V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GLYMA20G16860.1 (Glycine max), 5'ss of exon 3
ATATTGCGGCAATTAAAGCATGAGAATATCATTGAAATGCTTGATGCCTTTGAAAGCCCCCAGGAGTTCTGTGTTGTGACTGAGTTTGCTCAGgta----tgtccttctgcaagtgc--atctcattgcatctct----tcatcggagtgcaatttatttacaa---aagt---ctta--caattcattgcggaa-ggaaggccttcctagt---------------------------------------
|| ||  |  | || |||||||  ||||| ||| ||||||||||| ||||||||||||| || || || |||||||| || || ||||| || |||    | | | | | ||  ||    | | ||||   ||      | | |      |  || |||    |   ||||   || |   |  | |||| ||||  | |  |     || |                                       
ATCTTAAGAAAGTTGAAGCATGGAAATATTATTCAAATGCTTGATTCCTTTGAAAGCCCGCAAGAATTTTGTGTTGTTACAGAATTTGCACAAgtaatcatctgcattttcagttgacggtttgattgatacttgaaagttaccacttaccccttaattggtgatctaagtatactcagctatctgattgtggaacaggacactgaattattagagatgctgttgagctgattatattttttattttgcag

upper sequence: PP1S53_93V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GLYMA10G22860.1 (Glycine max), 5'ss of exon 3
ATATTGCGGCAATTAAAGCATGAGAATATCATTGAAATGCTTGATGCCTTTGAAAGCCCCCAGGAGTTCTGTGTTGTGACTGAGTTTGCTCAGgtatgtccttctgcaagtgcatctcattgcatctcttcatcggagtgcaatttatttacaaaagtcttacaattcattgcggaaggaaggccttcctagt-------------------------------------------------------------------------
|| || ||  | ||||||||||  ||||| ||| ||||||| ||| ||||||||||||| || || || |||||||| || || ||||| || |||    | |||| |  | ||  | |  |  |  ||    |    |  | || |     || |  |||||   | | |  |  |   |    | |  ||                                                                          
ATCTTACGAAAGTTAAAGCATGGAAATATTATTCAAATGCTCGATTCCTTTGAAAGCCCGCAAGAATTTTGTGTTGTTACAGAATTTGCACAAgtaa--tcatctgtattttcagttgacggtttgactgttacttc-tatatttgaaagttaaca--cttaccccttaataggtgatccaattatactcagctatctgatagtgaaacaggaaactgtgaattattagagatgctgtcaagctgattatattttttattttacag

upper sequence: PP1S53_93V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: AT1G50240.2 (Arabidopsis thaliana), 5'ss of exon 3
ATATTGCGGCAATTAAAGCATGAGAATATCATTGAAATGCTTGATGCCTTTGAAAGCCCCCAGGAGTTCTGTGTTGTGACTGAGTTTGCTCAGgta--tgtccttctgcaa---gtgcatctcattgcatctcttcatcg-gagtgcaattt-atttacaaaagtcttacaattcattgcggaaggaaggccttcctagt
||||||||| |  | |||||||||||||||||||||||||| ||  ||||||||| | | |  ||||||||||| || ||||||||||| || |||  | ||   ||| |    ||  |    |  | |    || ||   |  |  |  |  | ||| |  |     | ||| ||    ||||        ||   || 
ATATTGCGGAAGCTCAAGCATGAGAATATCATTGAAATGCTCGACTCCTTTGAAAACGCACGAGAGTTCTGTGTCGTCACTGAGTTTGCCCAAgtacttttctcactgtagattgtagaatctaaagtactgatttatgaagcatatagctagacttatatgaaataaagaat-caccatggaacacccaattttacag-

upper sequence: PP1S53_93V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: EFJ37043 (Selaginella moellendorffii), 5'ss of exon 3
---ATATTGCGGCAATTAAAGCATGAGAATATCATTGAAATGCTTGATGCCTTTGAAAGCCCCCAGGAGTTCTGTGTTGTGACTGAGTTTGCTCAGgtatgt----ccttctgcaagtgcatctcattgcatctcttcatcggagtgcaatttatttacaaaagtcttacaattcat-tgcggaaggaaggccttcctagt
   || ||||||||| ||||||| ||||| || || |||||||| ||||| ||||||||||| |||||||| ||||| ||||| || ||||| |||| | ||    | || |     ||  |||  | | || | |||||          ||| ||| | |  || |    | |||  |    |     |  ||| |||| 
CAGATTTTGCGGCAACTAAAGCACGAGAACATTATAGAAATGCTGGATGCATTTGAAAGCCCACAGGAGTTTTGTGTCGTGACAGAATTTGCACAGgcaagtgtaacattttctttttgtttctggt-gtattttttcatt---------tttcttttctagtgtgtggttactcacatttttatcattgttctttctag-

upper sequence: PP1S53_93V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: EFJ33693 (Selaginella moellendorffii), 5'ss of exon 3
ATATTGCGGCAATTAAAGCATGAGAATATCATTGAAATGCTTGATGCCTTTGAAAGCCCCCAGGAGTTCTGTGTTGTGACTGAGTTTGCTCAGgtatgtc---cttctgcaagtgcatctcattgcatctcttcatcggagtgcaatttatttacaaaagtcttacaattcat-tgcggaaggaaggccttcctagt
|| ||||||||| ||||||| ||||| || || |||||||| ||||| ||||||||||| |||||||| ||||| ||||| || ||||| |||| | ||    | | | |  ||   |   | || || | |||||          ||| ||| | |  || |    | |||  |    |     |  ||| |||| 
ATTTTGCGGCAACTAAAGCACGAGAACATTATAGAAATGCTGGATGCATTTGAAAGCCCACAGGAGTTTTGTGTCGTGACAGAATTTGCACAGGCAAGTgtaacattttcttgttgtttctagtgtattttttcatt---------tttcttttctagtgtgtggttactcacatttttatcattgttctttctag-