1 5' 3' | 2 5' 3' | 3 5' 3' |
GCAGAGCCGTGGTGAGAAGAAGAGCAGGAAGGCCATGCAAAAGCTTGGCATGAAGCCCGTGACTGAAGTCACACGGGTTACTATCAAGAAGAGCAAGAATgtatgcctctcggcttaaagttttactcttgtttgacgtgaacctctgtgcaactgttctgcagagtgtgctactatcttccatatctgtctggtcaaaa...
species | Physcomitrella patens |
transcript | PP1S539_1V6.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TGAAGCCCGTGACTGAAGTCACACGGGTTACTATCAAGAAGAGCAAGAAT ATCCTCTTTGTGATCTCGAAGCCTGATGTGTTCAAGAGCCCTGCATCAGACEST: gi|37839794|gb|BJ597802.1|BJ597802
genomic: TGAAGCCCGTGACTGAAGTCACACGGGTTACTATCAAGAAGAGCAAGAATgtatgcctct ... caacttgcagATCCTCTTTGTGATCTCGAAGCCTGATGTGTTCAAGAGCCCTGCATCAGAC
EST: TGAAGCCCGTGACTGAAGTCACACGGGTTACTATCAAGAAGAGCAAGAAT ATCCTCTTTGTGATCTCGAAGCCTGATGTGTTCAAGAGCCCTGCATCAGACEST: gi|37824901|gb|BJ582967.1|BJ582967
genomic: TGAAGCCCGTGACTGAAGTCACACGGGTTACTATCAAGAAGAGCAAGAATgtatgcctct ... caacttgcagATCCTCTTTGTGATCTCGAAGCCTGATGTGTTCAAGAGCCCTGCATCAGAC
EST: TGAAGCCCGTGACTGAAGTCACACGGGTTACTATCAAGAAGAGCAAGAAT ATCCTCTTTGTGATCTCGAAGCCTGATGTGTTCAAGAGCCCTGCATCAGACEST: gi|37821412|gb|BJ579478.1|BJ579478
genomic: TGAAGCCCGTGACTGAAGTCACACGGGTTACTATCAAGAAGAGCAAGAATgtatgcctct ... caacttgcagATCCTCTTTGTGATCTCGAAGCCTGATGTGTTCAAGAGCCCTGCATCAGAC
EST: TGAAGCCCGTGACTGAAGTCACACGGGTTACTATCAAGAAGAGCAAGAAT ATCCTCTTTGTGATCTCGAAGCCTGATGTGTTCAAGAGCCCTGCATCAGACEST: gi|18336799|gb|BJ168822.1|BJ168822
genomic: TGAAGCCCGTGACTGAAGTCACACGGGTTACTATCAAGAAGAGCAAGAATgtatgcctct ... caacttgcagATCCTCTTTGTGATCTCGAAGCCTGATGTGTTCAAGAGCCCTGCATCAGAC
EST: TGAAGCCCGTGACTGAAGTCACACGGGTTACTATCAAGAAGAGCAAGAAT ATCCTCTTTGTGATCTCGAAGCCTGATGTGTTCAAGAGCCCTGCATCAGACEST: gi|18336395|gb|BJ168417.1|BJ168417
genomic: TGAAGCCCGTGACTGAAGTCACACGGGTTACTATCAAGAAGAGCAAGAATgtatgcctct ... caacttgcagATCCTCTTTGTGATCTCGAAGCCTGATGTGTTCAAGAGCCCTGCATCAGAC
EST: TGAAGCCCGTGACTGAAGTCACACGGGTTACTATCAAGAAGAGCAAGAAT ATCCTCTTTGTGATCTCGAAGCCTGATGTGTTCAAGAGCCCTGCATCAGACEST: gi|37832326|gb|BJ590338.1|BJ590338
genomic: TGAAGCCCGTGACTGAAGTCACACGGGTTACTATCAAGAAGAGCAAGAATgtatgcctct ... caacttgcagATCCTCTTTGTGATCTCGAAGCCTGATGTGTTCAAGAGCCCTGCATCAGAC
EST: TGAAGCCCGTGACTGAAGTCACACGGGTTACTATCAAGAAGAGCAAGAAT ATCCTCTTTGTGATCTCGAAGCCTGATGTGTTCAAGAGCCCTGCATCAGACEST: gi|162209416|gb|FC385531.1|FC385531
genomic: TGAAGCCCGTGACTGAAGTCACACGGGTTACTATCAAGAAGAGCAAGAATgtatgcctct ... caacttgcagATCCTCTTTGTGATCTCGAAGCCTGATGTGTTCAAGAGCCCTGCATCAGAC
EST: CAAGAAGAGCAAGAAT ATCCTCTTTGTGATCTCGAAGCCTGATGTGTTCAAGAGCCCTGCATCAGAC
genomic: CAAGAAGAGCAAGAATgtatgcctct ... caacttgcagATCCTCTTTGTGATCTCGAAGCCTGATGTGTTCAAGAGCCCTGCATCAGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCAGAGCCGTGGTGAGAAGAAGAGCAGGAAGGCCATGCAAAAGCTTGGCATGAAGCCCGTGACTGAAGTCACACGGGTTACTATCAAGAAGAGCAAGAATgtatgcctctcggcttaaagttttactcttgtttgacgtgaacctctgtgcaactgttctgcagagtgtgctactatcttccatatctgtctggtcaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA